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Joined March 2011
Biological data resources are in peril. Funding for the databases researchers rely on every day is shrinking. If @veupathdb is part of your work, please ask your lab or institution to subscribe. Your support keeps us going. 💙 veupathdb.org/veupathdb/app/…
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Your data, your call. With My Datasets on @veupathdb, you choose who sees it: just you, your collaborators, or everyone. Add rich metadata so public datasets are easy to find and reuse, and meet funder & journal data-sharing requirements. Try it! veupathdb.org/veupathdb/app/…
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Uploading your data comes with help. My Datasets on @VEuPathDB now has: ✅ Checks for RNA-seq & bigWig files before upload 📖 A Help tab that walks you through prepping data 🤖 An AI Metadata Analyzer for RNA-seq raw counts Give it a try: veupathdb.org/veupathdb/app/…
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What can you upload to My Datasets on @veupathdb? 📊 • RNA-seq counts (raw or normalized) • Phenotype data • bigWig tracks • Gene lists • Generic data tables All of it connects to data already integrated! Take a look: veupathdb.org/veupathdb/app/…
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Got your own data? With My Datasets, you can import it into @veupathdb and explore it alongside our genomic and functional data. Keep it private, share it with collaborators, or get it ready for public release if you choose. 🧬 veupathdb.org/veupathdb/app/…
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VEuPathDB is free to use, but not free to run. 💙 Our existence, upkeep and new features (like Diff Exp!) depend on subscriptions from the communities we serve. Has your lab or institution subscribed for 2026? veupathdb.org/veupathdb/app/… #data #OpenScience
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@veupathdb's new differential exp search shows results on an interactive volcano plot 🌋 You can weigh fold change AND significance together, then set thresholds and pull out your gene list in a click. Click on DE to try: veupathdb.org/veupathdb/app/… #data #RNAseq #Bioinformatics
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Before you trust a gene list, look at your samples. 👀 Increase your confidence in your results by examining the experimental samples using PCA, built into VEuPathDB's new DE search. Click on a DE button to try it- veupathdb.org/veupathdb/app/… #RNAseq #data
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New on @veupathdb: differential expression analysis in your browser, no coding required. 🧬 Explore differential expression data using PCA & volcano plots and generate gene lists for further analysis. TRY IT! Click on a DE button- veupathdb.org/veupathdb/app/… #RNAseq #data
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A few weeks ago, VEuPathDB Release 71 went live! 🚀 Read the release notes to learn more this milestone release featuring all ✨new software infrastructure ✨ veupathdb.org/veupathdb/app/… Stay tuned as we highlight new features in the coming weeks! #Bioinformatics #data
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The webinar recording is live! 📺 If you're interested in uploading your own phenotype data into VEuPathDB platforms, check out our session covering phenotype data basics, how to integrate it, and how to explore it alongside other data. Watch it here: youtube.com/watch?v=-H1I3fEm…
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📣 Reminder! Our webinar THIS WED, May 13, 2 pm UTC will demonstrate how to upload ✨your own✨ gene lists, phenotype data, etc. privately to @veupathdb @fungidb @VectorBase and query it alongside our vast, curated resources. Register today: upenn.zoom.us/meeting/regist…
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Looking for new ways to explore and analyze your own data? Our webinar will demo how to upload your gene lists, phenotype data, etc. to @veupathdb @fungidb sites and query it alongside our vast, curated resources- Wed, May 13, 2 pm UTC. Register now! upenn.zoom.us/meeting/regist…
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🦟Calling vector biologists! @VectorBase will host a community meeting on Fri, March 27, to discuss current status, recent updates, and plans for VectorBase and the larger VEuPathDB project. Register for zoom link: upenn.zoom.us/meeting/regist…
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We want your input! @fungidb will host a virtual community meeting on Thu, March 26, 2026, 3 pm UTC to discuss current status, updates and future plans of 🍄 FungiDB and the wider @veupathdb.org resources. Register for zoom link: upenn.zoom.us/meeting/regist…
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Attending the Plant & Animal Genome Conference (Jan 9–13) in San Diego? Don’t miss a @veupathdb talk! Omar Harb will present on Saturday morning in the session 🧬“Genetics and Genomics of Plant Filamentous Pathogen Effectors.”🧬 #PAG33
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Happy New Year from the @veupathdb @fungidb @VectorBase team!✨ We’re excited for the year ahead- new data and tools, improved infrastructure, continued community engagement, and a focus on long-term sustainability so we can remain your go-to resource.
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🔬 Our first community-contributed image is here! Stunning SEMs of two Trichomonas vaginalis parasites connected by cytonemes. @deMiguelN Want to share your parasite images? Visit parasitesrule.com to contribute! 📸 Salas et al., eLife 2023 doi:10.7554/eLife.86067 @eLife
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Graduate students & postdocs: looking to level up your parasitology toolkit? The Biology of Parasitism (BoP) course at @MBLScience offers immersive, hands-on training with world-class faculty. 💰 Financial support available ⏰ Deadline: Feb 5, 2026 🔗 mbl.edu/courses
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Big thanks to everyone who participated in the 2025 @veupathdb virtual workshop last week- it was a busy, engaging time! #data #parasites If you missed it, all recordings + exercises are available online for asynchronous learning: veupathdb.org/veupathdb/app/…
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