4DN DCIC (@4dn_dcic) profile picture

4DN DCIC

@4dn_dcic

Data Coordination and Integration Center for the 4D Nucleome Project.

 Boston, MA
data.4dnucleome.org/
Joined November 2016
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Photo by 4DN DCIC (@4dn_dcic)Photo by 4DN DCIC (@4dn_dcic)Photo by 4DN DCIC (@4dn_dcic)Photo by 4DN DCIC (@4dn_dcic)
The new #NIH Data Management and Sharing Policy just went into effect, and there are Common Fund #OpenData #repositories ready to share and curate many different types of data!
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Spread the word! 4DN DCIC is in search of a new Scientific Data Curator. See the link below for details: sjobs.brassring.com/TGnewUI/…
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Check out the new 4DN data portal home page, redesigned for even easier access to the data and resources you're looking for: data.4dnucleome.org
Newly released #ChromatinTracing dataset from Bintu B et al. 2018 (Science), now re-formatted in standard #FISHomics format: data.4dnucleome.org/browse/?…
Newly released #ChromatinTracing dataset in standard #FISHomics format on active and inactive X chromosome, from @SStevenWang @ChengYubao: data.4dnucleome.org/browse/?…
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Update: Last week's disrupted services have been restored! We apologize again for any problems that you may have experienced. Please let us know if you encounter any lingering issues.
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We are currently experiencing outages with some of our portal services. We hope to have these issues resolved by August 4th and we apologize for any interruptions you may experience in the meantime.
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New Nature Methods editorial about microscope camera standards from the 4DN imaging working group and DCIC (in connection with Bioimaging North America and QUAREP-LiMi) nature.com/articles/s41592-0…. @StrambioLab @4dn_dcic
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Thrilled editorial on imaging standards from the 4DN imaging group and DCIC nature.com/articles/s41592-0…. @StrambioLab @4dn_dcic
Imaging standards to ease reproducibility and the everyday

Imaging standards to ease reproducibility and the everyday

Nature Methods - Imaging and microscopy technology advances in leaps and bounds. To address accumulated pain points, academics and companies are making headway on standards.

nature.com
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Check out our new #ChromatinTracing data collection: all datasets are formatted in the 4DN standard FISH Omics Format - Chromatin Tracing (FOF-CT) data.4dnucleome.org/resource… #4DNucleome #imagingstandards #FISH #omics #spatialomics #chromatin
Two newly released datasets in standard #FISHomics format FOF-CT: #ChromatinTracing in mouse ESCs and cerebral cortex from @LongCai_Lab @yodai_takei data.4dnucleome.org/browse/?…
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Do you love working with biological data and enjoy solving data organization problems? The 4DN DCIC in the lab of @peter_j_park at @HarvardDBMI is hiring for a new data curator! Apply at the link below or DM for details. #hiring @4DNucleome sjobs.brassring.com/TGnewUI/…
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Replying to @CfdeNih @NIH_CommonFund
The CFDE Portal now features a variety of data types from 11 groups: @4dn_dcic, @exRNA, @kidsfirstDRC, @GTExPortal, @glyco_pm, @_hubmap, @hmpdacc, @druggablegenome, @LINCSProgram, @sparc_science, @MetabolomicsWB. View the portal at: app.nih-cfde.org/ @NIH_CommonFund
Image from Common Fund Data Ecosystem (@CfdeNih)
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Read about the @4DNucleome data portal, now out in @NatureComms #FAIRdata nature.com/articles/s41467-0…
The 4D Nucleome Data Portal as a resource for searching and visualizing curated nucleomics data

The 4D Nucleome Data Portal as a resource for searching and visualizing curated nucleomics data

Nature Communications - This paper describes the ‘4DN Data Portal’ that hosts data generated by the 4D Nucleome network, including Hi-C and other chromatin conformation capture assays,...

nature.com
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The Park lab, our home at HMS, is hiring! Multiple open positions in our team and the lab for a data curator, a bioinformatician, postdocs, and more. Check out the link below!
Peter J Park (@peter_j_park) profile picturePeter J Park@peter_j_park15 Mar 2022
Park Lab is hiring! After a pause during the pandemic, we are recruiting postdoctoral fellows, scientific programmers, software engineers, and data curators. Join us to do exciting science in a fun and collaborative environment in Boston! Please see compbio.hms.harvard.edu/posi…
4DN DCIC retweeted
Jian Ma (@jmuiuc) profile picture
Jian Ma
@jmuiuc23 Feb 2022
We're announcing Nucleome Browser, an integrative & multimodal data navigation platform for @4DNucleome & the broad community. This tool is a result of tremendous creativity & herculean effort over the years from @nimezhu @zocean636, in collab. w/ @jrswedlow @belmont_andrew 1/n
Image from Jian Ma (@jmuiuc)
bioRxiv (@biorxivpreprint) profile picturebioRxiv@biorxivpreprint23 Feb 2022
Nucleome Browser: An integrative and multimodal data navigation platform for 4D Nucleome biorxiv.org/cgi/content/shor… #bioRxiv
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Newly released cryomilling TCC datasets available: data.4dnucleome.org/search/?… #4DNucleome #3Dgenome #FAIRdata
Victor V. Lobanenkov (@boris_ctcf) profile pictureVictor V. Lobanenkov@boris_ctcf15 Feb 2022
Cryomilling Tethered Chromatin Conformation Capture reveal new insights into inter-chromosomal interactions. Our results show that cryomilling TCC (CTCC) can generate a global contact map similar if not better to that obtained with in-situ Hi-C. biorxiv.org/content/10.1101/…
Cryomilling Tethered Chromatin Conformation Capture reveal new insights into inter-chromosomal...

Cryomilling Tethered Chromatin Conformation Capture reveal new insights into inter-chromosomal...

Traditional methods used to map the three-dimensional organization of chromatin in-situ generally involve chromatin conformation capture by formaldehyde crosslinking, followed by detergent solubili...

biorxiv.org
Call for #cshlnucleus abstracts--submit by 2/11! Genome Organization & Nuclear Function (May 3-7) Organizers: @belmont_andrew @NCITomMisteli @apombo1 @WickstromLab For info and COVID-related policies: bit.ly/nucleus22
Image from CSHL Meetings (@cshlmeetings)
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Notice of Special Interest (NOSI): Administrative Supplements to Support Enhancement of Software Tools for Open Science dlvr.it/SJYHS4
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The Common Fund Data Ecosystem is hosting a Virtual Hackathon Feb 21-25! We will explore Common Fund data sets and tools in concentrated sessions and asynchronous work. Find out more at: nih-cfde.github.io/2022-feb-… or register now at bit.ly/3grNqaq
Image from Common Fund Data Ecosystem (@CfdeNih)
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