Jakub Galgonek (@JGalgonek) profile picture

Jakub Galgonek

@JGalgonek
Joined June 2019
  • Tweets20
  • Following35
  • Followers14
Jakub Galgonek retweeted
ELIXIR Czech Republic (@ELIXIRCZ) profile picture
ELIXIR Czech Republic@ELIXIRCZAug 7
🇨🇿🤝🇨🇭 Proud to present ELIXIR IMPACT at the @SwissEmbassyCZ ! Together with our Czech and Swiss partners, we're connecting molecular, pathogen & clinical data with AI to advance personalised medicine and public health. Thanks #svycarskyprogram, #swisscontribution, @msmtcr
🤖 Made with AI
Image from ELIXIR Czech Republic (@ELIXIRCZ)
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We are continuously working on improving our Integrated Database of Small Molecules that employs Semantic Web technologies and is accessible at idsm.elixir-czech.cz/. Recently, we achieved a nice rating on YummyData, which monitors SPARQL endpoints: yummydata.org/endpoint.
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#IDSM (the small-molecule database developed by @ELIXIRCZ) now also allows you to search for small molecules by their mass spectrum via #SPARQL. doi.org/10.1093/bioinformati…
The IDSM mass spectrometry extension: searching mass spectra using SPARQL

The IDSM mass spectrometry extension: searching mass spectra using SPARQL

AbstractSummary. The Integrated Database of Small Molecules (IDSM) integrates data from small-molecule datasets, making them accessible through the SPARQL

academic.oup.com
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As a member of @ELIXIRCZ, we would like to introduce you to our new review on making relational databases accessible via #SPARQL. doi.org/10.1186/s13321-023-0…

A comparison of approaches to accessing existing biological and chemical relational databases via...

Journal of Cheminformatics - Current biological and chemical research is increasingly dependent on the reusability of previously acquired data, which typically come from various sources....

link.springer.com
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Using one query to link @ELIXIRCZ a idsm/sachem #SPARQL endpoint having #MolMeDB with @SwissLipids is fantastic. Connecting membranes to lipids data and on to @rhea,@uniprot and @chebit is real #FAIR #BioHackEU21
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Jakub Galgonek retweeted
UniProt (@uniprot) profile picture
UniProt@uniprot18 Nov 2021
UniProt release 2021_04 is out with 225,578,953 proteins! Read the headline: ZTGC: bacteriophages reinvent the DNA alphabet and catch up on all our updates at uniprot.org/news/2021/11/17/…
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Our new @ELIXIRCZ paper on the Integrated Database of Small Molecules: "IDSM ChemWebRDF: SPARQLing small-molecule datasets" jcheminf.biomedcentral.com/a…

IDSM ChemWebRDF: SPARQLing small-molecule datasets

Journal of Cheminformatics - The Resource Description Framework (RDF), together with well-defined ontologies, significantly increases data interoperability and usability. The SPARQL query language...

link.springer.com
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new: "IDSM ChemWebRDF: SPARQLing small-molecule datasets" jcheminf.biomedcentral.com/a…
Figure 1: ChEMBL data example.

ALT Figure 1: ChEMBL data example.

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Jakub Galgonek retweeted
neXtProt (@neXtProt_news) profile picture
neXtProt@neXtProt_news11 Mar 2021
Replying to @emblebi @bigcat_UM @ChEMBL
Happy to have ChEMBL #sparql back via the IDSM endpoint @ELIXIRCZ. Try our queries at snorql.nextprot.org/ #chemistry #compchem #drugdesign @egonwillighagen @JGalgonek
Image from neXtProt (@neXtProt_news)
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IDSM - Integrated Database of Small Molecules idsm.elixir-czech.cz/ youtu.be/09WwGtEMraw
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