
From whole animals down to single molecules @LJIresearch. Tweets by the members of the core + @zmikulski
La Jolla, San Diego
Joined April 2017
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LJI Microscopy Core retweeted
I just wanted to add that our FSD* is open source, and you do not need to keep your hands on the steering wheel!
*Fluorescence Self Driving
The self driving multi-scale microscope from @Daetwyler_St is out.
It can image a whole zebrafish embryo longitudinally and follow a region of interest with high resolution.
We use it to study immune-cancer cell interactions.
nature.com/articles/s41592-0…
LJI Microscopy Core retweeted
Measles outbreak erupts in one of Texas’ least vaccinated counties dlvr.it/THrtv4
LJI Microscopy Core retweeted

Florian Krammer@florian_krammer8 Feb 2025
United States
United StatesConnected via WebAccount-level information, not a live location or per-post device.
1) Since there is a lot of confusion about the reduction of the overhead rate on NIH grants to 15% (see here: grants.nih.gov/grants/guide/…) I'll do a little tweetorial (or X-torial?) about it.
LJI Microscopy Core retweeted
The National Institutes of Health plans to severely cut the percentage of its grant money that can be used for overhead costs rather than research. scim.ag/42LPG5S
LJI Microscopy Core retweeted
This rate of validation suggests that antibodies should be considered non-specific until proven otherwise:
357 validated out of 1,124 tested.
.
LJI Microscopy Core retweeted
Applications for our Quantitative Imaging From Acquisition: to Analysis 2025 course @QIatCSHL (Mar 24-Apr 8) are due on Jan 31! . Come immerse yourself in microscopy and image analysis with me, @TalleyJLambert, @florianjug, @BoSoxBioBeth & Hunter Elliott! Please RT! @cshlcourses
LJI Microscopy Core retweeted

RareCyte, Inc.@RareCyte16 Jan 2025
United States
United StatesConnected via WebAccount-level information, not a live location or per-post device.
We're thrilled to showcase this mouse ileum image, submitted by Simon Goldstein, @LJIMicroCore, in our 2025 Calendar!
📸 Image Details: 15-channel imaging of a normal murine ileum spiral, acquired on the Orion Spatial Biology Platform.
#SpatialBiology #MultiplexImaging
LJI Microscopy Core retweeted
Hey PIs, do your trainees need to learn light microscopy and image analysis? Send them to us! Financial aid is available.
meetings.cshl.edu/coursesint…
LJI Microscopy Core retweeted
Join me, @TalleyJLambert, @florianjug, @BoSoxBioBeth
& Hunter Elliott for our two week CSHL course on microscopy & image analysis starting March 24, 2025! Applications are due 1/31/25. meetings.cshl.edu/courses.as…
LJI Microscopy Core retweeted
I learned yesterday the video I made in 2017 explaining how Bitcoin works was taken down, and my channel received a copyright strike (despite it being 100% my own content).
The request seems to have been issued by a company chainpatrol, on behalf of Arbitrum, whose website says they "makes use of advanced LLM scanning" for "Brand Protection for Leading Web3 Companies"
I could be wrong, but it sounds like there's a decent chance this means some bot managed to convince YouTube's bots that some re-upload of that video (of which there has been an incessant onslaught) was the original, and successfully issue the takedown and copyright strike request.
It's naturally a little worrying that it should be possible to use these tools to issue fake takedown requests, considering that it only takes 3 to delete an entire channel.
LJI Microscopy Core retweeted
🚨🔬🤖📜 Paper is out! Introducing the #LiquidEngine and #NanoPyx - novel #AI strategies for accelerating #microscopy that explore how to maximise performance 🚀. Brainchild of @Bruno_MSaraiva, @inesmcunha and @Antonio_DBrito. Faster #SRRF and #eSRRF!!
📰: nature.com/articles/s41592-0…
And to start 2025 strong… Our work #NanoPyx is out in @naturemethods 😍❤️ DOI: doi.org/10.1038/s41592-024-0…
#NanoPyx is a Python framework that uses the #LiquidEngine to efficiently accelerate bioimage analysis for any user! (1/n) ⬇️
LJI Microscopy Core retweeted
Nice way to kick off 2025! Super proud of this work that @HaydenCStites started when he was in high school!
Many thanks to @cziscience for funding our efforts to democratize access to cutting-edge imaging tools ❤️
bmcmethods.biomedcentral.com…
LJI Microscopy Core retweeted
SpotMAX, our software tool for analysing multi-dimensional microscopy data, is finally out! 🎉 And conveniently, I just presented it at the #I2K conference 😀
A multi-year-long effort of many great collaborators and users. But what can SpotMAX do? A small thread
LJI Microscopy Core retweeted
Congrats to CBP and O’Brien Lab grad students Jake Roetcisoender and Pierre-Emmanuel N’Guetta for capturing this beautiful image and submitting it for the win!
Replying to @l_obrien_lab
@L_obrien_lab and @P_NGUETTA win @UNC_SOM 2024 Art in Science Competition! This image captures a rare urinary tract defect resulting in ureteral duplication. Read more: unc.live/4ffdHoL
View all winning images on the 1st floor of Bondurant Hall this week. #sciArt
LJI Microscopy Core retweeted
Thrilled to share that "The Ecstasy of Microscopy" has won Best #Documentary Short @RawScienceTV Film Festival. Massive thank you to @LJIMicroCore @ljiresearch for making this film possible. It was a privilege to share the film with an audience of curious minds in New York City.
LJI Microscopy Core retweeted
Now that the dust has settled..I will say this much, I’m livid. The more I find out about Stefano’s betrayal..the more angry I become. I chaired the search that hired him. We had many other wonderful apps to choose from. The hurt that he caused in Brenda’s lab and his own /1
Science is built on trust. What happens when someone destroys it?
My first feature for @_TheTransmitter investigates the emotional and existential fallout for one lab in the aftermath of a misconduct case.
thetransmitter.org/science-a…
LJI Microscopy Core retweeted
Relationship between chromosomes (orange) and the mitotic spindle (green) in four stages of cell division, as seen by Bessel Beam plane structured illumination microscopy cell.com/fulltext/S0092-8674…
LJI Microscopy Core retweeted
Thermal expansion -> a typical problem in time-lapse microscopy at high resolution. Here I measure the axial shift of the focal plane of a Nikon 40x0.95 air objective at ~1.6um/K, or about ~1.5x the depth of field per degree C:
github.com/amsikking/Nikon_4…
LJI Microscopy Core retweeted
🚀Applications are open for the 2025 edition of our EMBL Deep learning course for microscopy image analysis. This time, we will focus on more advanced methods so if so if you already know how to train models you will be in for a treat! Deadline Nov 25th
Are you ready to apply deep learning-based methods to your data and image analysis problems? If you've already trained a network in your own code, this is for you! #EMBLDeepLearning
🗓️ 17 – 21 February 2025
📍 EMBL Heidelberg
📩 Apply by 25 November
➡️ s.embl.org/mac25-01
LJI Microscopy Core retweeted
Just some T cells hanging out - #Immunology pic by Vida Luna @ljiresearch

































