Root biologist @ORNL building autonomous discovery for plant and soil science. Check @RootBiologyNews @RhizoVision My opinions #OpenScience
he / him | Oak Ridge, TN
Joined July 2009
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Diversity, equity, and inclusion are American ideals. DEI is about acknowledging flaws but building towards a better future. Equity makes it fair, diversity makes it fun, and inclusion is kind. I'm appalled by state bills in TX, KS, MT and FL that effectively seek to ban DEI.
Larry M. York retweeted
Interested in plant-microbe interactions and biochemistry. Come join my lab, the Plant Holobiome Engineering & Ecosystem Dynamics (PHEED) lab, at Virginia Tech beginning Fall 2025. See images for more details about the fully funded graduate student positions!
New paper! For years, I saw people often split up root samples that were too big to fit in a scan. But, there was no standard way to combine the data back. We solve this issue with two methods, image concatenation and statistical aggregation @RhizoVision
nph.onlinelibrary.wiley.com/…
ALT Figure showing how subsamples of roots can be combined to a concatenated image and processed with RhizoVision Explorer to analyze traits for an entire sample. Roots are shown for Peatland, Poplar, and Switchgrass. The original root images have black roots. The analyzed images have red roots.
Larry M. York retweeted
Divide and conquer: using RhizoVision Explorer to aggregate data from multiple root scans using image concatenation and statistical methods
Seethepalli et al. @LarryMattYork @ORNLBio_Env
📖 nph.onlinelibrary.wiley.com/…
#rstats
ALT Overall pipeline for image concatenation and image analysis. Multiple root subsample scans are shown for root samples taken from a northern peatland, poplar, and switchgrass.
It's true. If you like science, we have something for everyone. If you love science, we have everything for someone.
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Look out for RhizoVision at #plantbio2024 and let us know what you think. For anybody at the ASPB meeting, please consider filling out this short survey whether you've used RhizoVision or not as we make plans for future updates.
forms.gle/7asMkUuZu19BFh8C7
RhizoVision is at #plantbio2024 . Check out poster 1000-12 on new methods for RhizoVision.
Have your own poster with RhizoVision or see other posters that use it? Let us know the title, ask the author share a pic! Just tag @rhizovision and it will be shared!
I'm the Editor-in-Chief of @PlantDirectJ. Please say Aloha at #PlantBiology2024 . Come see me and other Editors-in-Chief for society journals today June 23 at this networking event at 11 45. What's on your mind about scientific publication? @ASPB @wileyplantsci
ALT Larry York with name tag overlooking Honolulu
ALT Meet the editor program item. 11 45 am June 23 in exhibit hall
Larry M. York retweeted
🔊IPPN provides up to 6 Travel Grants for early career professionals from academia or industry to attend #IPPS8 in Lincoln (NE, USA).
More information: plant-phenotyping.org/index.…
Had my 4th great meeting of the International Society of Root Research #ISRR12 - Australia, Israel, USA, Germany, and next up is China in 2027! @RootScientists
Anybody left around still and available for dinner in Leipzig this Friday evening? Send me a message!
ALT wienerschnitzel and potatoes
Ishan was the first winner of @RhizoVision Bingo! Congratulations. Have you seen RhizoVision used at #ISRR12 ? Try bingo in the link. I think there are 5 posters using it even just today. Happy to discuss during the poster session. rhizovision.com/isrr2024
Larry M. York retweeted
Read our latest paper "The auxin efflux carrier PIN1a regulates vascular patterning in cereal roots" published online in New Phytologist nph.onlinelibrary.wiley.com/…. Congratulations to Riccardo Fusi & the team
In case you don't know, the following link is among the most mind-blowing things on the internet that highlights the recursive nature of life, even reality.
Many of us are tasked in science at the moment to work across levels and to tame emergence.
oimo.io/works/life/
Larry M. York retweeted
Delighted to announce that after a few test orders from y'all my webstore is now live! Feel free to place an order and I'll ship as fast as I can make em. Thanks again for supporting small synbio and helping me make more tools for the community.
Atinygreencell.com
Please spread the word if you know early career researchers attending the International Society of Root Research meeting in June in Leipzig. We have travel awards to help them attend! See details in quoted Tweet and link.
Do you have a communication (oral or poster) at the next meeting of the International Society of #Root Research in Leipzig (June 2024)?
Are you an ECR (student, PhD candidate ,or <5 years after PhD)?
Then consider applying to a travel grant! #ISRR12
docs.google.com/document/d/e…
I am hiring a postdoctoral researcher with my colleague Dr. Chen at ORNL to work on shoot and root responses to fungal and bacterial partners in Populus trees. Physiology, microbes, and image-based phenotyping all a plus. Check out the ad and please share! jobs.ornl.gov/Exempt/job/Oak…
Do you ever think about how the coolest thing about deep learning and artificial neural networks is that they are deliberately engineered to mimic the human brain, and in image-based research specifically the retina to brain network?
Yeah me either.
I still see examples of no citation or improper citation for @RhizoVision Explorer. If you are reviewing papers that use free, open-source software, please make sure they contain accurate citations. Our citation guidance is here: rhizovision.com/cite
Larry M. York retweeted
🌱 Join us! A research associate position will soon be available in my lab, focusing on plant-soil interactions with a special focus on functional root traits.
Feel free to contact me with your CV if you are interested.
#Postdoc #PlantSoilMicrobes #ResearchOpportunity 🌿🔬