Seeking molecular mediators of kidney disease through human genetics, genomics, and novel experimental models. @UCSF, @UCSFNephrology

Joined August 2022
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Replying to @kidney_boy
We should limit extrapolating these data to patients undergoing nephrectomy for tumors. Kidney donors are selected for absence of kidney disease and kidney disease risk factors (description of the donors below). Patients undergoing partial nephrectomy don't look like this.
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Thank you to @kidneyomicsamps and @MagdalenaRiedlK for the thoughtful editorial on our paper functionalizing 𝘗𝘒𝘋1 variants and implications for polycystic kidney disease (ADPKD) genetic testing and treatment. DOI: 10.1681/ASN.0000001174 journals.lww.com/jasn/fullte…
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We are constantly thinking about how to integrate human genetics and better experimental models to identify the mechanisms of human disease @UCSFNephrology, @IHG_at_UCSF, @UCSFDOM . Funding for the next generation of medicine from @NIH. Critiques and feedback welcome!
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Thank you to many incredible coauthors including Daji Ha (now Assistant Pofessor at @PittTweet), Meyeon Park who runs the UCSF PKD Center of Excellence, and @MarkusDellingSF @UCSFPhysiology, Mohona Gupta, Yukako Akiyama, Jillian Argiris, Aide Pinedo, Christine Haewon
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Campaigns to identify and advance small molecules that improve PKD1-PKD2 channel function should be next.
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Our results suggest that similarly small molecules that improve the trafficking and channel function of PKD1 could treat polycystic kidney disease. Even prior to our manuscript, campaigns to advance small molecules that improve PKD1 trafficking were underway within biotech/pharma
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Our results are reminiscent of cystic fibrosis. Cystic fibrosis is also a monogenic disease caused by mutations in an ion channel. Distinct small molecule medicines rescue the trafficking and channel function of CFTR dramatically improving many lives.
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We also found that a subset of pathogenic variants that did not traffic to the primary cilium could be rescued by culture at low temperature. A subset of these temperature sensitive variants had normal ion channel function upon rescue.
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Surprisingly all pathogenic variants disrupted either trafficking of PKD1 to the primary cilium or function of a PKD1-PKD2 heteromeric ion channel. This human genetic evidence supports a model in which PKD1-PKD2 ion channel function at the primary cilia prevents cysts.
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We reasoned that we could use human genetic variation in PKD1 to learn how PKD1 prevents cysts. PKD1 pathogenic variants but not benign variants must disrupt molecular functions that restrain cystogenesis. We studied 29 nontruncating pathogenic and benign variants in PKD1.
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Polycystic kidney disease is the most common monogenic cause of kidney failure and affects over 10 million individuals. We've known most PKD is caused by mutations in PKD1 for over 30 years. But how PKD1 prevents disease has remained mysterious, limiting effective therapy.
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What an awesome session on common variant CKD genetics @ASNKidney #KidneyWk @kidneyomicsamps @LoebLab @LimdiNita
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Nice talk by @LoebLab at #KidneyWk! -Approved targeted therapies for monogenic kidney disease -Next generation therapies for genetic disease
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Incredible session on Genetics in Kidney Disease #KidneyWeek @ASNKidney Outstanding organization & insightful talks by @Vishal_D_Patel #DanielGale #AliGharavi #GabrielLoeb Grateful for the opportunity to present on Genetics of TMA🙏 Thx #ArleneChapman & #EmilieCornecLeGall
🧬Very nice talk about genetics of TMA by @anuja_java at #KidneyWk 👉🏽 Interplay between genetics and triggers 👉🏽Who should we test?
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Thank you @ASNKidney! Our lab is very grateful to receive the 2025 Carl W. Gottschalk Research Scholar Grant. Read more about the work here: kidneycure.org/pages/qa.aspx….
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Grateful for the chance to learn from @ksusztak, @parkercwilson, and others @Penn and @PennKidney. So much science to be excited about.
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#Whyscience Day51🧠✨A strong finish to our Renal Grand rounds series by a rising star physician scientists ⁦@LoebLab⁩ ⁦@UCSFNephrology⁩ Pushing the frontiers of kidney genomics and single cell omics. The future of nephrology is bright🔆
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Are you content with your current chance of developing Alzheimer’s disease?
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Steven Pinker: And if you’re still skeptical that universities are worth supporting, consider these questions: Do you think that the number of children who die every year from cancer is just about right?
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