@NYGCtech

@nygenome's Technology Innovation Lab : @mssanjavickovic @manimota @yougotkunal @Chao00Yan @f_cambuli @sarafedez_ @dwmckellar @cwpfautz

 New York, NY
vickovictechinnovation.com/
Joined March 2017
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Big news: The Vicković Lab’s (@NYGCtech) study on colon aging has been accepted by @NatureBiotech! The team built a detailed atlas of aging colon tissue, using spatial transcriptomics + a new tool (cSplotch) to profile ~1,500 samples & 400k nuclei. Link: bit.ly/4hj3ry7
cSplotch Summary Schematic

ALT cSplotch Summary Schematic

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Super happy to see our work on spatial host-microbial interactions out and about! Congrats to Britta and @mstrazar07 who spearheaded the work! This was one for the ages! Big thanks to @NYGCtech @Cancer_dynamics @ColumbiaBME @KAWstiftelsen @broadinstitute @UU_University @NHGRI
Nature Biotechnology
@NatureBiotech20 Nov 2023
Spatial host–microbiome sequencing reveals niches in the mouse gut go.nature.com/3sGmJbU
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Another researcher joins the IICD: Craig Fouts, an MS in @APAMMSECU, develops statistical #machinelearning tools and designs probabilistic models for #singlecell genomics in @mssanjavickovic and @bidumit labs @NYGCtech.
Craig Fouts

ALT Craig Fouts

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A pioneer in spatially resolved transcriptomics and genomics methods, Sanja Vicković recounts her journey from professional ice hockey player to running her own lab go.nature.com/3OmrPlK rdcu.be/dg9s4
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IICD member Sanja Vicković was recently awarded a two-year grant from @TargetALS_fdn for her project "creating a spatial genomics resource for ALS-FTD neuropathies." Read more: bit.ly/44dDisj cc: @ColumbiaBME @NYGCtech @nygenome
Headshot of Sanja Vicković

ALT Headshot of Sanja Vicković

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Abstract Select: Sanja Vickovic from @nygenome focuses on spatial host-microbiome sequencing at the 2023 @AGBT General Meeting in Florida. #AGBT23
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Spatial-host microbiome sequencing (SHM-seq) shows accurate measures of interactions between intestinal crypts’ gene expression changes and the dynamics of the bacterial residents, by Sanja Vickovic from @nygenome #agbt23
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Sanja Vickovic on spatial host-microbiome sequencing #AGBT23
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The napari-PICASSO plugin for @napari_imaging to unmix images with fluorescence spillover is out. Come to poster 576 @agbt to chat about the plugin and teaching an @illumina HiSeq 2500 new tricks.
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We posted 8 positions in the last week alone @nygenome @NYGCtech Come join the best #Innovation program in the country to work with @manimota @raimondi_ivan @yougotkunal @Chao00Yan nygenome-openhire.silkroad.c…
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High-powered imaging + genomics data + #OpenSource tools = #ImagingTheFuture! Kunal Pandit is building an open access plugin for the @napari_imaging hub that will make it easier for researchers around the world to make detailed maps on how genes are expressed throughout a tissue
Photo of Kunal in the lab wearing nitrile gloves and holding up a rectangular device to their face

ALT Photo of Kunal in the lab wearing nitrile gloves and holding up a rectangular device to their face

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My labs @nygenome @NYGCtech @ColumbiaBME @UU_University hiring at all levels! If you’re interested in #techdev #singlecell #SpatialTranscriptomics @humancellatlas get in touch with bio&description of (i) what you want to work on and (ii) fav project so far [email protected]
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Ivan Raimondi from @nygenome on multi factorial chromatin profiling at single-cell resolution #singlecellgenomicsday
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Harm Wessels and Carol Dalgarno on new technologies and opportunities for single-cell perturbation screens #singecellgenomicsday
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Yuhan Hao on cross-modality integration of single cell data #singlecellgenomicsday
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Replying to @SDutta_2904 @NYGCtech @satijalab @nygenome
All the plasmids will be available in Addgene soon. TFs profiling is still challenging with transposase-based methods, but we figured that out, stay tuned…
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Thanks to all the people involved, @timoast in primis, who better than him for single cell chromatin analysis?
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Make sure to also check out the beautiful work from @GoCasteloBranco , same amazing idea, same amazing results, but different tissue
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#singlecell and #chromatin folks!We are excited to introduce NTT-seq, a new technology that allows for multifactorial chromatin profiling both in bulk and at single-cell resolution!Check it out! Another amazing collab piece by @NYGCtech and @satijalab at @nygenome
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Our next @cegs_ica virtual seminar will be on October 19 at 12PM EST @joanapetrescu and @yougotkunal will discuss how to repurpose an Illumina HiSeq2500 into a programmable microfluidics imaging platform using pySeq2500! Free registration: nygenome.zoom.us/meeting/reg…
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