@PyroAi

Deep Universal Probabilistic Programming in PyTorch & JAX

pyro.ai
Joined February 2021
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  • Following61
  • Followers780
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I just got a hardcopy of my own book - it finally feels real :) I'm very happy with the print quality (see attached photo) - but you can still get the pdf for free from probml.ai if you prefer.
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My 1st paper out in @NatureBiotech 🎉 Thread as promised👇 Cell2location, built from first principles, improves the sensitivity and scale of tissue atlasing (combines single cell + spatial transcriptomics). Amazing teamwork @bayraktar_lab @OliverStegle nature.com/articles/s41587-0… 1/n

Cell2location maps fine-grained cell types in spatial transcriptomics

Nature Biotechnology - A Bayesian model maps the location of cell types in tissues with higher sensitivity.

nature.com
Omer Ali Bayraktar@bayraktar_lab13 Jan 2022
finally out @NatureBiotech: cell2location tool for integration of single cell & spatial transcriptomics! Tons of new work showing that we can resolve fine cell types in spatial RNAseq & comprehensively map tissues. With @OliverStegle, proud of @vitaliikl👇nature.com/articles/s41587-0…
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Sharing a description of TyXe arxiv.org/abs/2110.00276, a little pyro-based BNN library we designed with Hippolyt Ritter which started with his internship with Uber AI Labs and got presented last year at #ProbProg2020. 1/5

TyXe: Pyro-based Bayesian neural nets for Pytorch

We introduce TyXe, a Bayesian neural network library built on top of Pytorch and Pyro. Our leading design principle is to cleanly separate architecture, prior, inference and likelihood...

arxiv.org
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What is Probabilistic Programming? + A quick & opinionated review of @mcmc_stan @pymc_devs @PyroAi @TuringLang @TensorFlow Probability (TFP) youtu.be/-C8PGgnF1yg using an example from @rlmcelreath's Statistical Rethinking book
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The MuE method is now available as part of Pyro docs.pyro.ai/en/dev/contrib.…. Big thanks to @ftzo for making this possible. AND Checkout talk and poster by @EliWeinstein6 icml.cc/virtual/2021/poster/…
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Today we released scvi-tools v0.12.0. This release features better integration with @PyroAi thanks to @vitaliikl, some critical bug fixes for the Solo doublet detection method, and various other small changes. Highly recommend upgrading! docs.scvi-tools.org/en/stabl…
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New paper! 🚀We present an end-to-end differentiable strong lensing image analysis pipeline with @PyTorch and @PyroAi, using our own blazing-fast Variational Gaussian process implementation for the source + lens reconstruction. Important for #DarkMatter searches! 🧵👇
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Today we officially released scvi-tools v0.9.0. There are a lot of new features, the biggest of which is a new toolkit to rapidly develop probabilistic models for single-cell omics data powered by @PyTorchLightnin, @PyTorch, @PyroAi, and AnnData scvi-tools.org/blog/v090

scvi-tools 0.9.0 release | scvi-tools

Today we officially released scvi-tools version 0.9.0 (changelog). This release marks the culmination of five months of work on the backend of the codebase, which came after three months of work on...

scvi-tools.org
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