
Group based @BabrahamInst in Cambridge. Interested in #phosphatases. She/her. Now on BSky - see you over there.
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ALT Heatmap showing differential gene expression between WT and PTPRK KO HT29 cells that was rescued by reintroduction of PTPRK and/or PTPRK.RQ. Graph of Gene ontology (GO) analysis of genes suppressed by PTPRK showing an overrepresentation of genes annotated with the biological processes ‘epithelial to mesenchymal transition’ and ‘mesenchymal cell differentiation’, as well as Wnt signalling. Amongst genes that were upregulated by PTPRK, GO analysis revealed overrepresentation of genes annotated with the terms ‘negative regulation of epithelial cell proliferation’ and ‘regulation of cell migration’. Also, graph showing a ∼2-fold upregulation of Ptprk in organoids treated with TGFβ1 in the RNA-seq data from two out of three published studies. Finally, a graph showing that organoids mutant for P53 and KRas harbouring the Notch1 ICD showed significantly reduced levels of PTPRK.





















