https://teapaw.org/t.co/ewVPXyikCT Account managed by Dr. Lara Ianov
Birmingham, AL
Joined September 2017
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We're incredibly proud to release scnanoseq. It's been a rewarding journey to develop a pipeline that is modular, implements robust methods, & enhances reproducibility & accessibility of computational workflows. This is also the first nf-core pipeline from UAB!
~ Austyn & Lara
Pipeline release! nf-core/scnanoseq v1.0.0 - nf-core/scnanoseq v1.0.0 - Titanium Toad!
Please see the changelog: github.com/nf-core/scnanoseq…
The UAB Biological Data Science core is hiring!
We’re looking for a computational biologist, ideally with transcriptomics analysis experience to join our team.
Please view details below & feel free to reach with questions.
Apply at: uab.taleo.net/careersection/…
U-BDS (UAB Biological Data Science core) retweeted
Congratulations to CNC faculty Lara Ianov and Farah Lubin on well-deserved Dean's Excellence Awards for Service and Mentoring!
Congratulations to the 2025 Dean’s Excellence Award winners for faculty! This group exemplifies the best of the Heersink School of Medicine. #UABHeersink
Our preprint of nf-core/scnanoseq was released today: biorxiv.org/content/10.1101/…
Here, we provide an overview of the pipeline design, validation results and benchmarking.
We hope it serves as a valuable resource for others working with long-read single-cell transcriptomics.
U-BDS (UAB Biological Data Science core) retweeted
Interested in single cell genomics but need help getting started? Check out the full agenda for our Single Cell Genomics Day on Friday 4/25. All talks will be live-streamed (no registration required) at satijalab.org/scgd25
We are happy to release v1.1.0 of nf-core/scnanoseq today. A key enhancement is the addition of the workflow path for Oxford Nanopore scRNA-seq with oarfish quantification.
Pipeline release! nf-core/scnanoseq v1.1.0 - nf-core/scnanoseq v1.1.0 - Iron Alligator!
Please see the changelog: github.com/nf-core/scnanoseq…
Proud to have our work highlighted by the UAB eReporter. This would not be possible without a great team including, @lizworthey , @Bharat26oct, @nilesh_uab, @LukeSkyrunner and Austyn Trull
~Lara
Highlighting my great colleagues & their work over at @UAB_BDS, the Biological Data Science Core!
uab.edu/reporter/research/co…
U-BDS (UAB Biological Data Science core) retweeted
Our Single Cell Genomics Day - highlighting our favorite new sc/spatial methods - starts Friday at 10AM ET!
The most common question we get: is this open to anyone? Yes! Talks are free and live-streamed (no registration required) on Youtube and satijalab.org/scgd
Had a great time hosting a @swcarpentry workshop, covering Python, Unix and Git the past two days.
We enjoyed teaching, learning and discussing all things data science with a great group of participants!
Hope to see you all next time!
U-BDS (UAB Biological Data Science core) retweeted
Want to hear about the latest updates/new techniques in single cell and spatial genomics? Check out the full agenda for our Single Cell Genomics Day on Friday, 3/29. All talks will be live-streamed (no registration required) at satijalab.org/scgd
U-BDS (UAB Biological Data Science core) retweeted
Want to hear about the latest updates/new techniques in single cell and spatial genomics? Check out my lab's eighth annual Single Cell Genomics Day on March 29. Keynotes from @IdoAmitLab @JD_Buenrostro and Xiaowei Zhuang. Please RT/spread the word! satijalab.org/scgd
Our team is growing and thus we are #hiring. If you are interested in transcriptomics, single-cell/nuclei, and or spatial transcriptomics we encourage you to apply! Also, feel free to send us direct messages or emails with your resume and interest. Apply: uab.taleo.net/careersection/…
Great turnout for our R, Unix and Git @swcarpentry workshop. Thanks to U-BDS and @lizworthey team members for being certified instructors and our helpers!
Had a great time presenting on our @nf_core pipeline, scnanoseq at #rsgdream2023 . Join us at the #scnanoseq channel in the nf-core Slack group for additional discussions.
~ Austyn and Lara
U-BDS (UAB Biological Data Science core) retweeted
Did @10xGenomics just make newer versions of Cell Ranger open source? github.com/10XGenomics/cellr… (cc @sjackman, @luizirber). This is a huge win for open, transparent, and reproducible science if it’s the case!
U-BDS (UAB Biological Data Science core) retweeted
We need to focus on Reproducible Biological Data Science. This is what we strive for @UAB_BDS.
Reproducibility trial: 246 biologists get different results from same data sets nature.com/articles/d41586-0… – at Birmingham, AL
Thanks @10xGenomics for the invite to discuss data analysis resources for 10X datasets. Slides can be seen here if helpful to anyone docs.google.com/presentation…
U-BDS (UAB Biological Data Science core) retweeted
The UAB Heersink SOM has just relaunched its highly successful strategic neurosciences recruiting initiative! We are looking to recruit up to 20 faculty (at any rank) across UAB neuroscience departments. See posting linked here for details!
uab.peopleadmin.com/postings…
U-BDS (UAB Biological Data Science core) retweeted
We are excited to release Seurat v5- with new methods for multimodal, spatially resolved, and massively scalable single-cell analysis. satijalab.org/seurat
