@_MIAnalysis

MIA is a Fiji plugin which provides a modular framework for assembling image and object analysis workflows. Developed @wbif_bristol by @_sjcross

mianalysis.github.io/
Joined April 2022
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  • Following75
  • Followers58
5Media
MIA version 1.7.0 is now out via the ImageJ updater. This adds modules for converting large images to tile stacks and converting them back. These support tile overlap with linear gradient mixing.
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Both new modules available in the Images > Transform menu
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This version also allows any LUTs installed in ImageJ to be applied to images and for different composite modes (min, max and invert) to be used via ShowImages
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ModularImageAnalysis (MIA) retweeted
Stephen Cross@_sjcross8 Nov 2024
The @RoyalMicroSoc Journal of Microscopy special issue for Data Analysis In Microscopy (DAIM) is now out and includes the paper on MIA! onlinelibrary.wiley.com/toc/…

Special Issue: Data Analysis in Imaging: Journal of Microscopy: Vol 296, No 3

The Journal of Microscopy is the oldest journal dedicated to the science of microscopy, publishing the latest advances in microscopy techniques and novel areas of application.

onlinelibrary.wiley.com
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MIA version 1.6.9 is now available via the ImageJ Updater. The big new feature is compatibility with Meta's Segment Anything model, which is integrated using the fantastic SAMJ plugin for ImageJ. It's now possible to simply click objects in "Manually Identify Objects".
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You can find out more about the SAMJ plugin at github.com/segment-anything-…

GitHub - segment-anything-models-java/SAMJ-IJ: An ImageJ/Fiji plugin designed to effortlessly...

An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code. - segment-anything-models-java/SAMJ-IJ

github.com
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You can find out more about Segment Anything at segment-anything.com

Segment Anything Playground | Meta

A playground for interactive media

aidemos.meta.com
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New example workflow at github.com/mianalysis/mia-ex…. This one details how object relationships in MIA can be used to classify isolated and overlapping DNA molecules from AFM images.
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As with all example workflows, each module has a detailed description that can be accessed by going to View > Show notes panel
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Our shiny new website is now live thanks to the skills of @jdjfisher_. The site includes guides to using MIA as well as complete documentation for all modules. Speedy documentation search is courtesy of the excellent @algolia. Check it out at mianalysis.github.io
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ModularImageAnalysis (MIA) retweeted
Stephen Cross@_sjcross26 Sep 2023
I'm pleased to share MIA (@_MIAnalysis) in its published format. The paper describes MIA using a series of real-world example analyses. doi.org/10.1111/jmi.13227
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New example workflow for tracking objects added to github.com/mianalysis/mia-ex…
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This example introduces the "Spot detection" and "Track objects" modules, which both use MIA's TrackMate integration. Example also demonstrates parent-child relationships in context of tracked objects.
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Image sequence is a timelapse of yolk syncytial layer (YSL) nuclei from the Cell Image Library (cellimagelibrary.org/images/…)
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We're proud to now be an official image.sc forum Community Partner. We can be found on there with the tag modular-image-analysis forum.image.sc/tag/modular-i…
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ModularImageAnalysis (MIA) retweeted
Stephen Cross@_sjcross26 Jul 2023
A wonderful look at MIA from @VetAna_Sto 😊 analyticalscience.wiley.com/…
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