@_sjcross

Bioimage analyst at Wolfson Bioimaging Facility, University of Bristol. Developer of @_mianalysis.

 Bristol, England
github.com/SJCross
Joined October 2008
  • Tweets42
  • Following279
  • Followers224
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As always, had an excellent time at @The_CBIAS this year. It was great to discuss how we can continue to strengthen our bioimage analyst community
Crick BioImage Analysis Symposium@The_CBIAS26 Nov 2024
Replying to @The_CBIAS
We finish off #CBIAS2024 with a bang! Panel discussion about community building and initiatives now in full swing with @ahklemm, Aastha Mathur and Stephen Cross, chaired by @tjaslater
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The @RoyalMicroSoc Journal of Microscopy special issue for Data Analysis In Microscopy (DAIM) is now out and includes the paper on MIA! onlinelibrary.wiley.com/toc/…

Special Issue: Data Analysis in Imaging: Journal of Microscopy: Vol 296, No 3

The Journal of Microscopy is the oldest journal dedicated to the science of microscopy, publishing the latest advances in microscopy techniques and novel areas of application.

onlinelibrary.wiley.com
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MIA version 1.6.9 is now available via the ImageJ Updater. The big new feature is compatibility with Meta's Segment Anything model, which is integrated using the fantastic SAMJ plugin for ImageJ. It's now possible to simply click objects in "Manually Identify Objects".
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We're hiring! Applications open to join our lovely light microscopy support team here in Bristol. 🔬🧠🦠🪰🐟🧬🔬 For more details, jobs.ac.uk/job/DJZ821/techni… Deadline 16th October! 😀
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Family photo in Nature! nature.com/articles/d41586-0…

Could roving researchers help address the challenge of taking parental leave?

Nature - Institutions are taking notice of a handful of programmes designed to address the issues scientists face when choosing to take a long-term absence.

nature.com
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If you license your work, it'll be harder to steal it 🥷😊 focalplane.biologists.com/20…

If you license it, it'll be harder to steal it. Why we should license our work - FocalPlane

If you license it, it'll be harder to steal it. Why we should license our work - Discussions

focalplane.biologists.com
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Stephen Cross retweeted
RMS
@RoyalMicroSoc12 Dec 2023
The RMS DAIM Section present "Image.sc LIVE! around the world"🌏 🗓️Jan 18 (Europe, Africa, Americas) 🗓️Jan 19 (Asia, Aus, NZ) 📍GatherTown Post your bioimage analysis question on the forum and an expert will answer it live with you! forum.image.sc/t/image-sc-li…
Image.sc Live! poster. Carries written information about the online discussion event, a small, green and blue micrograph in the bottom corner, and a QR code to submit questions.

ALT Image.sc Live! poster. Carries written information about the online discussion event, a small, green and blue micrograph in the bottom corner, and a QR code to submit questions.

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New example workflow at github.com/mianalysis/mia-ex…. This one details how object relationships in MIA can be used to classify isolated and overlapping DNA molecules from AFM images.
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Had a great time at the @LUMICKS_nl @LUMICKS_US Global C-Trap User Meeting. Interesting to see the wide variety of applications
LUMICKS_USA@LUMICKS_US9 Nov 2023
We had a successful Global C-Trap User Meeting 2023 in Amsterdam with over 30 participants joining us at the LUMICKS HQ. With presentations, poster session, workshop, and networking dinner, we brought together our user community to connect and exchange ideas
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I'm pleased to share MIA (@_MIAnalysis) in its published format. The paper describes MIA using a series of real-world example analyses. doi.org/10.1111/jmi.13227
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Thanks to the reviewers for stimulating comments that have seeded some exciting future directions for MIA.
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#bioimage analysts and #data scientists please contribute to the Journal of Microscopy Special Issue on tools and workflows for #bioimageanalysis and data management in #imaging rms.org.uk/resource/special-… Deadline: 1st October 2023 @JofMicroscopy @RoyalMicroSoc @BioImagingUK
JournalofMicroscopy@JofMicroscopy5 Sep 2023
📣 The deadline has been extended for the Data Analysis in Imaging (DAIM) special issue until 1st October 2023. Find out more here: ow.ly/3B2t50Mtyhe @RoyalMicroSoc @BioImagingUK @IoP_EMAG @alicepyne @petebankhead @martinjones78 @SuperResoluSian @TheCrick
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New example workflow for tracking objects added to github.com/mianalysis/mia-ex…
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We're proud to now be an official image.sc forum Community Partner. We can be found on there with the tag modular-image-analysis forum.image.sc/tag/modular-i…
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A wonderful look at MIA from @VetAna_Sto 😊 analyticalscience.wiley.com/…
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Applications now open for our new light microscopy support role at @wbif_bristol Wolfson Bioimaging Facility (Bristol).  For more information, check out bristol.ac.uk/jobs/find/deta…
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Excited to share that the preprint for my MIA workflow automation ImageJ plugin is now live on BioRxiv 🎉😀🔬
bioRxiv@biorxivpreprint13 Jun 2023
ModularImageAnalysis (MIA): Assembly of modularised image and object analysis workflows in ImageJ biorxiv.org/cgi/content/shor… #bioRxiv
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SAVE THE DATE 20-21st November 2023 #CBIAS2023. We are looking forward to all things image analysis. Are there any speakers or hot topics you want to see? Let us know. #BIAnalysis #science #conference
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First @_MIAnalysis of the year! Key new feature in this version is the ability to run DeepImageJ (Bioimage Model Zoo) models directly as part of a workflow github.com/mianalysis/mia/re…

Release Version 1.2.1 · mianalysis/mia

Added ApplyDeepImageJModel module, which runs any DeepImageJ currently installed in Fiji on a provided image (requires DeepImageJ update site to be enabled). Added DistanceBands module, which creat...

github.com
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Such a good couple of days at #CBIAS2022. Some amazing science on show and great to see everyone in person again after all this time. Thanks @The_CBIAS
Crick BioImage Analysis Symposium@The_CBIAS22 Nov 2022
And that's a wrap!! Huge thanks to everyone participating, all speakers, presenters, attendees, sponsors, organizers, and people behind the scenes 👏 #CBIAS2022 Safe travels and we look forward to seeing you at #CBIAS2023🔥
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