André Forjaz (@andreforjaz) header
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PhD candidate @ Johns Hopkins Univ. | Wirtz Lab | Institute of Nano biotechnology (INBT) 🇵🇹

Baltimore, MD
Joined November 2021
Photo by André Forjaz (@andreforjaz)Photo by André Forjaz (@andreforjaz)Photo by André Forjaz (@andreforjaz)Photo by André Forjaz (@andreforjaz)Photo by André Forjaz (@andreforjaz)Photo by André Forjaz (@andreforjaz)Photo by André Forjaz (@andreforjaz)Photo by André Forjaz (@andreforjaz)
Not the official Science Advances cover of this month, but you can still find it in the current issue! Check our latest paper where we used 3D-CODA to design assembloids that mimic the complexity of human fallopian tubes. Paper:science.org/doi/10.1126/scia… – at Baltimore, MD
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Read about how a joy of discovery in engineering took PhD alum Alice Amitrano from Rome to Johns Hopkins, where she studied how cells adapt to their surroundings, including the physical and chemical ways cancer cells change as they spread through the body. inbt.jhu.edu/alum-follows-jo…
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Elana Fertig, Hartland Jackson, Linghua Wang, Deniz G. Olgun, and Sungsik Kim discussed "Spatial Biology and Actionable Tumor Ecosystems: Beyond the Pretty Picture" to close out the AACR Conference on Pancreatic Cancer. #AACRpan26 @hartjackson @IamLinghua
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Congrats on the 25th anniversary of @NatureRevCancer . honored to have our paper on 3D Tumor Atlas @theNCI #HTAN included in this special issue. Kudos to my postdoc @Miao__Liu, and congrats to @deniswirtz @SStevenWang @StimulatedRaman @AshleyKiemen nature.com/nrc/volumes/26/is…
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3D multi-omics tumour atlases: from technology to biology and clinical translation Read this Nature Reviews Cancer paper here: nature.com/articles/s41568-0…
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A detailed protocol for CODA to segment tissue components in histological sections for 3D reconstructions. Led by colleague Prof. Kiemen @JohnsHopkins Use this protocol here: nature.com/articles/s41596-0…
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Excited to share our new tool, out today in @NatureProtocols! CODAvision includes a detailed guide on generating high-quality annotations for segmentation and a graphical user interface to make finetuning easy. Huge shoutout to first author @Valen_mat00s! nature.com/articles/s41596-0…
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Amazing work!
Excited to share our new tool, out today in @NatureProtocols! CODAvision includes a detailed guide on generating high-quality annotations for segmentation and a graphical user interface to make finetuning easy. Huge shoutout to first author @Valen_mat00s! nature.com/articles/s41596-0…
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3D reconstruction reveals highly conserved vascular network architecture despite phylogenetic diversity spanning >300M years of evolution. Moer here: biorxiv.org/content/10.64898…
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Great colleague Rong Fan led a team of experts at Yale, Hopkins, and UCSD to write a review on 3D multi-comics of tissues and tumors. Check it out: nature.com/articles/s41568-0…
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Immune remodeling during early pancreatic cancer progression. Individual immunes cells around PanIN lesions are mapped using CODA More here: sciencedirect.com/science/ar…
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Delighted to share our latest review on 3D multi-omics tumor atlases. A major @theNCI #HTAN team work w/ @deniswirtz @AshleyKiemen @StimulatedRaman @SStevenWang, kudos to my phenomenal postdoc @Miao__Liu and co-contributors Jorge, Andre, & Xiaolong, on this team work! 🥰
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Welcome renowned biologist, @apombo1, who joins @JohnsHopkins as the Bloomberg Distinguished Professor of Genome Biology. hub.jhu.edu/2026/06/02/genom…
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From @AshleyKiemen, @deniswirtz, & colleagues, (@JohnsHopkins @HopkinsMedicine): Quantitative 3D histology reveals localized immune remodeling during early pancreatic cancer progression cell.com/cell-press-blue/ful… #ResearchWithInfinitePotential
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Blood vessel mapping in 3D in a rhesus macaque embryo. We used CODA. More here: biorxiv.org/content/10.64898…
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The new Issue of @cellpressblue is out today with CODA on the cover! Here you see normal pancreatic ducts in blue with tens of precancerous lesions throughout in red. Read more in our recent article here: cell.com/cell-press-blue/ful…
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Currently my favorite video from the lab... Mapping of blood vessels and nerves in whole embryos of rhesus macaque. They form scale-free fractals of dimensions 3 and 2, independently of development stage. More here: biorxiv.org/content/10.64898…
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The vasculature system as mapped by CODA. Color coded by radius size and Strahler order. We found that the vasculature for mouse, rhesus macaque, chicken, and turtle have the same scale-free space-filling fractal geometry (D = 3). Here: biorxiv.org/content/10.64898…
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So proud of our lab alumnus, @KaustavBera11 (PhD ’22), on joining @PurdueChemE as an Assistant Professor! Excited to see him launch his lab and continue advancing the frontiers of mechanobiology, biomaterials and tissue engineering. Wishing him every success in this new chapter!
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Big paper coming out soon. Using AI, we mapped embryos of mice, alligators, turtles, rhesus macaques, and chickens in 3D and at single-cell resolution. We discovered something truly remarkable...stay tuned!
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