Assistant Professor in the Department of Biomedical Informatics, OSU. #SingleCell, #metagenomics, #DeepLearning, #CancerResearch. @MaTRIX_Lab
Columbus, OH
Joined February 2015
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- Followers74
- Likes37
It's time for spatial and single-cell intratumoral microbiome analysis! @wen_haitao let's do this!
Microbes play critical roles in the tumor microenvironment. Analyzing #intratumoral microbes in immuno–oncology–microbiome from host samples/cells is becoming a trend. Here, we focus on the intratumoral microbiome in #IOM and describe the available data and ...
One of my most important works in the past three years! It witnessed my growth from a PhD to a Research Scientist😂. So proud that we finally made it!
We are thrilled to announce that our DeepMAPS for #scMultiomics and #GRN inference is open access on @NatureComms! It is useful to infer cell-type-specific gene regulatory mechanisms in complex tissues and #CancerResearch. nature.com/articles/s41467-0…
We made it! Cheers 🍻🍻
Glad to announce that our scDEAL has been published on @NatureComms! It predicts single-cell drug responses in cancer by integrating single-cell and bulk RNA-seq data using a deep transfer learning framework. @DongXu10710609 @anjunma90 @OhioStatePIIO nature.com/articles/s41467-0…
Anjun Ma retweeted
Congrats to @Cosm_Shawn @anjunma90 @carter_allen_ Dongjun Chung @carter_allen_ & @zihai et al. for their paper introducing RESEPT, a novel tool that represents and recognizes tumor, non-tumor, and tumor infiltration architectures in GBM. doi.org/10.1016/j.csbj.2022.… #ImmunoInformatics
Big Congrats! We should have a party for this! 🥳🥳
It is my great honor to be appointed as the Section Chief of Computational Biology and Bioinformatics in the Department Biomedical Informatics at OSU. I would like to thank everyone that supported me @Zihai @PIIO_OSU @TriStateSenNet @PECGSnetwork. Let's grow BMI better together💪
Anjun Ma retweeted
New method alert!🚨We're thrilled to present #Spatial #metaTranscriptomics (SmT) to detect #host-#bacteria-#fungi #interactomes in tissues. Collaboration between @sami_saar in my lab and @orshalevsk, @Haim_Ashkenazy, @DerekSeveri, Vanessa in @PlantEvolution lab.Main findings in🧵
BIG CONGRATS! So proud to be one of the BMBL members.
We are pleased to announce that Dr. Qin Ma will serve as the leader of the Immuno-Oncology Informatics Group (IOIG) within the Pelotonia Institute for Immuno-Oncology (PIIO) at the OSUCCC – James. Cheers! @PIIO_OSU @Zihai @QinMaBMBL cancer.convio.net/site/Messa…
Anjun Ma retweeted
We had a wonderful time at the TriState SenNet Conference with our teams from @PittDeptofMed @UR_Med @OSUWexMed @CMUCompBio last week. Can't wait to see everyone again! #TriStateTogether @sennetresearch @NIH_CommonFund
Anjun Ma retweeted
Have interests in single-cell multi-omics and immuno-oncology? Check our fresh comment paper entitled "The use of single-cell multi-omics in immuno-oncology" on @NatureComms. @anjunma90 @GangXin1. nature.com/articles/s41467-0…
So proud to be involved in such fantastic work! 🎉🎉
My #Tweetorial on our recent work on the roles of T cell intrinsic #androgen receptor (AR) in CD8+ T cell exhaustion in cancer.
1/n
Link to the original paper:
science.org/doi/10.1126/scii…
Press release for the public:
sciencedaily.com/releases/20…
Anjun Ma retweeted
Finally gave in to twitter, but here is an exciting first tweet on our work! So grateful to @schafeJoj and all other collaborators- and of course, @Zihai for mentorship (and an excellent #tweetorial)!
My #Tweetorial on our recent work on the roles of T cell intrinsic #androgen receptor (AR) in CD8+ T cell exhaustion in cancer.
1/n
Link to the original paper:
science.org/doi/10.1126/scii…
Press release for the public:
sciencedaily.com/releases/20…
I am really excited to attend Front Line Genomics's latest event: "Single cell and Spatial Omics ONLINE - Webinar 2: Single-cell multi-omics – approaches and analysis" Register via the link below app.livestorm.co/p/1300ec69-… @FLGenomics
Anjun Ma retweeted
.@juexinwang @anjunma90 @QinMaBMBL @DongXu10710609 present scGNN, a deep learning framework for gene expression and cell-cell relationships from scRNA-seq data.
go.nature.com/2PzihYg
I feel so lucky to be part of the BMBL lab and thanks to everyone who supported my back!
Congratulations to @anjunma90 to pass his Ph.D. defense and become the first Ph.D. student who graduated from the BMBL lab. Many great works and papers have been done by him in the past three years! Good job and way to go!
This is so impressive!
We substantially updated #starmapVR to include visualisation of single cell and spatial omic data. Nice collaboration with @kevin_tsia who created this amazing video! Preprint: biorxiv.org/content/10.1101/…
Anjun Ma retweeted
Cell-type-specific gene regulations in diseases deserve deeper investigations. Check our newest review paper "Elucidation of Biological Networks across Complex Diseases Using Single-Cell Omics". @anjunma90 @YangLi28840559 sciencedirect.com/science/ar…
Anjun Ma retweeted
Here comes a single-cell RNA-seq #Alzheimers database developed based upon our IRIS3 server. We included annotated AD neuron clusters and cell-type-specific regulons by different conditions😎. scREAD: A single-cell RNA-Seq database for Alzheimer's Disease disq.us/t/3qw04nj
Anjun Ma retweeted
Check our ZOOM records for the 2020 single-cell workshop at ISU. Subscribe our BMBL YouTube channel for future virtual workshops and tutorials. youtube.com/playlist?list=PL… via @YouTube
Anjun Ma retweeted
bioRxiv viewer disq.us/t/3qtswct See our recent preprint of GNN-based tool for scRNA-seq imputation and cell clustering. Amazing collaboration work with Dr. Dong Xu's lab. @juexinwang @anjunma90 @Cosm_Shawn
Anjun Ma retweeted
Try our IRIS3 (bmbl.bmi.osumc.edu/iris3/) for identifying cell-type-specific regulons from scRNA-Seq. Good work! @WangCankun @Cosm_Shawn @FaithBrennan01 @anjunma90 .
IRIS3: integrated cell-type-specific regulon inference server from single-cell RNA-Seq academic.oup.com/nar/advance…