~~~ Bioinformatics, amateur photography & marathon runner ~~~
Daly City, CA
Joined November 2019
- Tweets79
- Following58
- Followers45
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Cameron Soulette retweeted
What a creative way to use @PacBio Iso-Seq to identify chitin genes in species w/out a genome. They used Cogent+SUPPA so they could see. alt splicing! mdpi.com/1660-3397/19/7/392
Cameron Soulette retweeted
Minimap2 v2.19 released with better and more contiguous alignment over long INDELs and in highly repetitive regions, improvements backported from unimap. These represent the most significant algorithmic change since v2.1. Use with caution. github.com/lh3/minimap2/rele…
Cameron Soulette retweeted
1/ I am super excited to share our recent work benchmarking short read sequencing performance across the Mtb genome. If you’re using Illumina WGS data to study M. tuberculosis, this work should be extremely useful to you. biorxiv.org/content/10.1101/…
Major comments - something the reviewer just needed clarification on.
Minor comments - suggests to double your sequencing effort with alternative approach.
🤦♂️🤦♂️🤦♂️
This amazing @Magdoll , congrats!
Our preprint for VCFCons is up! We wrote this to generate consensus for @Labcorp SARS-CoV-2 @PacBio sequences. Code is up at CoSa github.com/Magdoll/CoSA biorxiv.org/content/10.1101/…
Cameron Soulette retweeted
Introducing MrHAMER, our @nanopore-based high accuracy viral sequencing platform that yields single-molecule reads to ≥99.9% accuracy. Truly a team effort at the @BruceTorbett and @AndrewRouth labs. A thread 🧵...
biorxiv.org/content/10.1101/…
Cameron Soulette retweeted
Congrats Yulianna Ortega for being honored with the 2020 @ucsc Outstanding Staff Award!! Yuli is a passionate @stemdiv student advocate and mentor, working hard to bridge the diversity gap in science, engineering, and technology. sci.ucsc.edu/2P32IVt
ALT Yulianna Ortega, UC Santa Cruz Director of STEM Diversity Programs
Cameron Soulette retweeted
At long last our RNA binding protein study has been published! Great collaboration with @yeo_lab @daSpliceIsRight Eric Lecuyer and Xiang-Dong Fu! nature.com/articles/s41586-0…
I forgot how amazing workflow managers can be when given the proper TLC #docker #singularity #snakemake #nextflow #ughazureblobs
Looks like a great dataset!!!
github.com/GoekeLab/sg-nex-d… contains data from 5 cell lines, 3 long read + 1 short read protocol, each at least with 3 replicates. short read data (all with spike in) will be uploaded soon
Cameron Soulette retweeted
RNA-Seq Analysis Reveals Localization-Associated Alternative Splicing across 13 Cell Lines biorxiv.org/content/10.1101/…
Cameron Soulette retweeted
Our exploration & visualization tools for public #PCAWG data has been featured in the Genomes and Epigenomes Focus @NatureComms! Collaborative work with @icgc_dcc #ChromothripsisExplorer @ExpressionAtlas
(@irenepapatheodo) & #PCAWG-Scout (@mikisvaz) #nciitcr
Looking for exciting research in #genomes and #epigenomes? Explore newly featured research curated by Nature Communications editors. New highlights added monthly. #EditorsHighlights go.nature.com/NCOM-GenomesEp…
Cameron Soulette retweeted
We're releasing the largest batch of annotations of AS event functions in @VastDB so far. We reached ~2200 entries! I honestly never expected there were so many articles experimentally assessing the functions of individual AS events! And we're not done yet! 😃 Please RT!
After the lockdown, here's the largest batch of alternative splicing event annotations released so far (v1.9): 481 new entries from published articles and 114 from another CRISPR screen study. We reach a total of 2197 entries. Please RT to help us!
@CRGenomica @mirimiam
Cameron Soulette retweeted
Excited to share our latest research which is a collaboration with @TheBrooksLab . This work was headed up by our incredible students @elektra_robi and @pratibhajagann_
Inflammation Drives Alternative First Exon usage to Regulate Immune Genes including a Novel Iron Regulated Isoform of Aim2 biorxiv.org/cgi/content/shor… #bioRxiv
Cameron Soulette retweeted
Co-chairing a consortium with the amazing @anaconesa and @calizavi! Looking forward to better understanding how long-read @PacBio and @nanopore technologies and analysis methods can contribute to higher quality transcriptomes.
The Long-read RNAseq Genome Annotation Assessment Project Consortium is organizing a systematic evaluation of methods for transcript identification & quantification using long-read data. Those interested in participating can join the mailing list here:
gencodegenes.org/pages/lrgas…
