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With millions of data entries, cross-filtering is painfully laggy
Not with our (me and @domoritz) new JavaScript library FalconVis!
With FalconVis, you can cross-filter your visualizations at scale with no interaction delay!
Try it out! dig.cmu.edu/falcon-vis/cross…
🧵👇
I would sell both my kidneys to keep using modal dojo
Performant reinforcement learning is a hard infrastructure and research problem. We’ve recently made on-demand multi-node clusters available and showed how to take advantageous of heterogeneous sampling compute. But there still exists the need for high-fidelity environments, clear and robust reward functions, and tuned training recipes that actually work.
Most teams are actually nearly there! With an agent harness deployed in production and evals/agent traces collected from that deployment, you just need an easy way to start training your data. So we built a training library that gives you the building blocks, tuned defaults, and observability you need for easy, production-grade LLM training.
It’s available now. All it takes is a prompt.
I worked on bioatlas, check it out!
To replace animal testing with AI, we need MASSIVE human datasets.
Today, we're thrilled to share Axiom's new data exploration tool, providing the ability to visually explore the world's largest primary human liver toxicity dataset. Built with Axiom's proprietary wetlab protocols, our dataset includes detailed liver toxicity profiles for over 100,000 distinct molecules.
The key to this dataset is our ability to do high-throughput, multiplexed high-content screening with primary human liver cells. Traditionally, toxicity assays either sacrifice throughput or sacrifice biological relevance (using easy-to-grow immortalized cell lines instead of real human cells). We managed to combine throughput, physiological relevance, and multiplexing in one platform. The assays run in a high throughput format using automation, meaning thousands of compound-dose conditions can be tested in one experiment. We achieved this using pooled primary human hepatocytes, which are often fragile and expensive. By systemizing our automation and quality control processes, we were able to run over 120+ batches on the same donor pool with incredible reproducibility and consistency.
We did this while integrating many readouts per well, whereas many existing toxicity assays only do a single readout. Our multiplexed approach provides far more data per experiment enabling us to measure 10-20 different toxicity phenotypes such as apoptosis, necrosis, mitochondrial fission, endoplasmic reticulum stress, stress granule formation, microtubules, and more all from a single well on a 384-well plate! The combination of scale, high content information, and data quality is exactly what is needed to train highly accurate AI models in biology.
If you're interested, please explore the dataset in the comments below and let me know if you want to chat about the details!
DonnyB retweeted
To replace animal testing with AI, we need MASSIVE human datasets.
Today, we're thrilled to share Axiom's new data exploration tool, providing the ability to visually explore the world's largest primary human liver toxicity dataset. Built with Axiom's proprietary wetlab protocols, our dataset includes detailed liver toxicity profiles for over 100,000 distinct molecules.
The key to this dataset is our ability to do high-throughput, multiplexed high-content screening with primary human liver cells. Traditionally, toxicity assays either sacrifice throughput or sacrifice biological relevance (using easy-to-grow immortalized cell lines instead of real human cells). We managed to combine throughput, physiological relevance, and multiplexing in one platform. The assays run in a high throughput format using automation, meaning thousands of compound-dose conditions can be tested in one experiment. We achieved this using pooled primary human hepatocytes, which are often fragile and expensive. By systemizing our automation and quality control processes, we were able to run over 120+ batches on the same donor pool with incredible reproducibility and consistency.
We did this while integrating many readouts per well, whereas many existing toxicity assays only do a single readout. Our multiplexed approach provides far more data per experiment enabling us to measure 10-20 different toxicity phenotypes such as apoptosis, necrosis, mitochondrial fission, endoplasmic reticulum stress, stress granule formation, microtubules, and more all from a single well on a 384-well plate! The combination of scale, high content information, and data quality is exactly what is needed to train highly accurate AI models in biology.
If you're interested, please explore the dataset in the comments below and let me know if you want to chat about the details!
DonnyB retweeted
Excited to share our #CHI2025 paper: "Interactive Debugging and Steering of Multi-Agent AI Systems"!
As 🤖 AI agent teams 🤖 powered by LLMs take on complex tasks, debugging and steering these agents becomes crucial. How can developers better understand AI agent behavior?
DonnyB retweeted
Do you work with text data for your job or research? We’d love to talk to you!
We're running a paid user study at CMU to understand how people explore and visualize text data while programming—and to gather feedback on our new open-source visualization tool.
Details below 👇
DonnyB retweeted
👋 I'm at #NeurIPS2024🇨🇦 workshops this weekend! I'll be presenting new work on participatory AI & public-sector AI governance on Sunday:
10:30am: Oral @ EvalEval
1:15pm: Poster @ EvalEval
2:00pm: Oral @ RegML
DonnyB retweeted
Introducing KnowledgeVIS! 🧠
KnowledgeVIS is a #visualization tool that compares fill-in-the-blank LLM prompts, revealing stereotypes & biases 💯
Paper: arxiv.org/abs/2403.04758
Code: github.com/AdamCoscia/Knowle…
Check out how KnowledgeVIS helps NLP practitioners evaluate LLMs: 🧵
Visualize input output pairs for ARC-AGI + a couple compression metrics you can filter by @arcprize
xnought.github.io/explore-ar…
DonnyB retweeted
What happens when you let users integrate data on-the-fly into a #visualization? 🤔
Our #IEEEVIS2024 paper presents guidelines for designing visualization tools that integrate data automatically throughout #analysis! 📊
Let's explore how to combine integration and analysis: 🧵
DonnyB retweeted
I'm (still) recruiting #PhDstu #PhD students to join our lab @HKUSTCSE @hkust in 🇭🇰from Fall 2025.
I design visual analytics tools to enhance analytics workflows! Check my website: arpitnarechania.github.io
If you are at #ieeevis #ieeevis2024, I'd love to chat, email me.
More👇
DonnyB retweeted
D3 animations are amazing for SVG-based vis, but hard to scale to Canvas/WebGL. I made Counterpoint to help me make large animated embedding plots, and now I’m excited to share it as an open-source JS/TS framework. Presenting virtually @ieeevis this Wed! arxiv.org/abs/2410.05645
This Post is from an account that no longer exists. Learn more
DonnyB retweeted
👣ProvenanceWidgets👣- Presenting on Wed, Oct 16th, in the "Scripts, Notebooks, and Provenance" session @ieeevis #ieeevis #ieeevis2024
📢 Want to track and visualize user interactions with sliders🎚, dropdowns 🔽, radio buttons 🔘, and checkboxes ☑️?
We made 👣ProvenanceWidgets👣, a library of UI control elements to track and dynamically overlay analytic provenance.
@ieeevis #ieeevis #ieeevis2024 👇 (1/n)
DonnyB retweeted
Join us for #VISxAI tomorrow October 13 from 8:30--11:30am ET! 🥳
👀Watch live with us on YouTube youtu.be/UUkftG2KH5o
Made VQ-VAE Explainer with @PoloChau. Check it out! xnought.github.io/vq-vae-exp…
It's a Vector-Quantized Variational Autoencoder that you can interact with live in the browser!
Repo: github.com/xnought/vq-vae-ex…
Credit to original VQ-VAE authors @avdnoord, @OriolVinyalsML, @koraykv (I modified their Figure 1 by adding interaction) and @RisingSayak for the VQ-VAE Keras Code Example.
Map of 250k proteins based on function: atlas.nomic.ai/data/donnyber…
Made with @nomic_ai Atlas and @Kevin_E_Wu ProteinCLIP embeddings.
Also made a quick interface to find similar proteins from 569k swiss-prot proteins using the ProteinCLIP embeddings ocular.cc.gatech.edu/DS569k/
Computed embeddings from github.com/wukevin/proteincl… (@Kevin_E_Wu) and data directly from uniprot.org/help/downloads.
If you want to reuse the data and embeddings, I have all 569,192 rows in a single parquet file huggingface.co/datasets/donn… easily read via pandas on @huggingface datasets.
















