Open-source Java library dedicated to the structural analysis of metabolic networks. Toolbox available in jar, Docker, singularity and Galaxy.
Toulouse, France
Joined June 2022
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To compare metabolic networks, it is important that they have the same identifiers. Met4J 1.2.0 provides an app to change the ids of metabolic entities in an SBML file from dictionaries. ⬇️
And don't forget that you can contribute to Met4J, or play with it from Docker or Singularity images, or directly from Galaxy (usegalaxy.fr/).
#sbml is the main exchange format for genome scale metabolic networks. However, it can become a nightmare to read or edit a SBML file. The met4j-toolbox proposes 2 methods, Sbml2Tab and Tab2Sbml to convert SBML to tabulated file and vice versa.
forgemia.inra.fr/metexplore/…
Just in time for @jobim2022, we finished the version 1.0 of Met4j !
forgemia.inra.fr/metexplore/…
Next week, come and discuss with the Met4j developers at the @jobim2022 conference around the poster No T8.14.
@clement_frainay @LudoCottret
Good news if you want to analyse the topology of metabolic networks: you can now try met4j, a Java library for developers... and an application toolbox for others: forgemia.inra.fr/metexplore/…. All feedbacks are welcome !
@metexplore @clement_frainay @LouisonFresnais @LudoCottret