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The StackOverflow of neuroscience by @INCForg

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Joined July 2014
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Timeseries extraction dlvr.it/TDcyWX

Timeseries extraction

Summary of what happened: I extract time series from (code below): ~/func/sub-0250_task-rest_space-MNI152NLin2009cAsym_res-2_desc-denoised_bold.nii.gz and sub-0250_task-rest_space-MNI152NLin2009cAs...

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Postdoctoral Research Fellow in NeuroImaging and Deep Learning dlvr.it/TDcbtG

Postdoctoral Research Fellow in NeuroImaging and Deep Learning

馃殌 Exciting Opportunity Alert! 馃殌 Are you passionate about neuroimaging and deep learning? Join us at the Neurobiology Research Unit (NRU) in Copenhagen, Denmark, as a Postdoctoral Research Fellow!...

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Brain Lobes segmentation task dlvr.it/TDcbsT
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Openneuro and fmriprep minimal derivatives dlvr.it/TDZmzS
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ASLprep error freesurfer subjects directory in NeurodeskApp dlvr.it/TDZR44
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Do I have to use parallel to process multiple subs using xcp_d? dlvr.it/TDZ3Ym

Do I have to use parallel to process multiple subs using xcp_d?

Summary of what happened: Hi experts, at first, I didn鈥檛 do parallel, and found that all subs were being processed together, and eventually the thing crashed with error like: OSError: [Errno 28] No...

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Recon-all for hcp data dlvr.it/TDYqGg
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fMRIprep is not doing Susceptibility Distortion Correction dlvr.it/TDYfzh
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Help Needed: Java Runtime Error when Running DKE Software dlvr.it/TDY6nt
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Freesurfer 7.4.1| mris_fix_topology: Command terminated by signal 11 dlvr.it/TDW6jy
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Replicating Nilearn Decoder Accuracy in Sklearn dlvr.it/TDVh43
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ALFF,fALFF calculate manually with python3 dlvr.it/TDSJKl

ALFF,fALFF calculate manually with python3

Hi. I鈥檇 like to calculate ALFF for each voxels for my data(.nii.gz) The reason for doing so is that I want to apply various atlas mask.such as shen,Yeon and so on. I tried various software like...

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Difficulty Opening Applications in Neurodesk dlvr.it/TDSJKS

Difficulty Opening Applications in Neurodesk

Summary of what happened: I am giving neurodesk a try and am having difficulty getting it to open any applications. I am running the neurodesk app on a Mac (macOS 13.6.1) and I am running it locally....

neurostars.org
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Simple question about spm12 dlvr.it/TDSJHn

Simple question about spm12

Summary of what happened: I have a very simple question about SPM12. I obtained the anatomical T1 image of a participant, and normalized the brain to MNI brain with SPM12 using spatial.normalise.es...

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Xcp-d output on surface dlvr.it/TDRvTN

Xcp-d output on surface

I have trouble getting xcp-d output in fsLR space. I wonder if anyone had any thoughts. I run fMRIprep: singularity run -B $HOME/.cache/templateflow:/opt/templateflow,$bids_root_dir:/mnt /home/test...

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Dcm2bids is not adding the taskname dlvr.it/TDRc6S

Dcm2bids is not adding the taskname

Hello, do you know why dcm2bids would not add the taskname: { "descriptions": [ { "datatype": "anat", "suffix": "T1w", "criteria": { "ProtocolName": "*T1w*" }, "sidecar_changes": { "ProtocolName":...

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27
Voxel size of the dMRI data dlvr.it/TDQVh4

Voxel size of the dMRI data

Dear experts, I am working on the dHCP dMRI data (3rd release). I find that the voxel size of the preprocessed dMRI data is 1.171875 x 1.171875 x 1.5, which is not 1.5 mm isotropic as described in...

neurostars.org
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QSIrecon cannot set the undefined 'plot_reports' attribute of a 'DSIStudioTrackingInputSpec' object dlvr.it/TDQVf8
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Fmriprep BOLD Brain Mask Including Non-Brain Tissue dlvr.it/TDPZTg

Fmriprep BOLD Brain Mask Including Non-Brain Tissue

Hi all, I am encountering an issue with the BOLD brain mask being generated by fmriprep including too much non-brain tissue. The pipeline we鈥檙e using goes on to reference this mask in subsequent...

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ABSTRACTS DUE 11/01: ABCD Insights & Innovations Meeting (AIIM) dlvr.it/TDPJ1r

ABSTRACTS DUE 11/01: ABCD Insights & Innovations Meeting (AIIM)

It鈥檚 that time again! The ABCD Study鈥檚庐 NIH Collaborators are hosting the second ABCD Insights & Innovations Meeting (AIIM) on March 3-4, 2025 at the National Institutes of Health in Bethesda. Do you...

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