The home of protein design data. An open platform by @adaptyvbio for sharing protein designs, their experimental validation and their design methods.

Joined December 2024
Today we’re launching Proteinbase, a single hub for experimental protein design data. Over 1,000 novel proteins are already live, each with computational predictions, experimental validation, and the method used to design them. Everything comes from one lab under standardized protocols, which means the results are reproducible, comparable, and include negative data that usually never gets shared.
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New data drop on Proteinbase! proteinbase.com/collections/…
We're excited to share results from our latest wet lab campaign with @AnthropicAI and @citrini. Claude designed novel proteins to neutralize scorpion toxins and we tested 211 of these protein designs in our automated wet lab. 17 of them showed binding to the toxins in our experiments, with all data now available on @proteinbase. This is a great example of what we're building towards: A world where anyone can run drug discovery campaigns on our automated wet lab.
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Proteinbase retweeted
Challenge 4 of the Anthropic × Adaptyv Protein Design Competition on @proteinbase is open: design a pH-sensitive protein to help shuttle drugs into the brain. TfR1 is a receptor protein that brings iron-loaded transferrin into cells. It is highly expressed in the blood-brain barrier and drug developers can use this receptor to get drugs to pass the blood-brain barrier. The drug is fused to a binder to TfR1, which makes cells absorb the protein complex. If the binder is pH-sensitive it will release from the receptor inside the endosome and then exit the cells on the brain-facing side to deliver the therapeutic into the brain. In this challenge, the goal is to make a pH-sensitive binder to TfR1 that targets precisely the right region on the receptor in order to allow absorption into the cell.
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Less than 24 hours left for Challenge 2 of the Anthropic x Adaptyv Protein Design Competition. Design a TNF-α binder that binds human and mouse TNF-α that binds pH 7.4 and doesn't bind at endosomal pH. Submissions close Sunday 18 Oct, 23:59 AoE.
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Proteinbase retweeted
We’re sponsoring wet-lab validation for the Defense Bio Hackathon, hosted by American Bioenhancement today in San Diego 180+ designers, 300 designs wet-lab tested in 5 tracks: - Frontier bio - Biological data - Human performance - Biomanufacturing - Biosecurity See you there! luma.com/kfgh2fvu
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Proteinbase retweeted
Challenge 3 of the Anthropic × Adaptyv Protein Design Competition is open. You have to design a protein that switches on GLP1R, the receptor that semaglutide (Ozempic, Wegovy) and tirzepatide act on in type 2 diabetes and obesity.
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Proteinbase retweeted
Announcing Challenge 2 of the Anthropic x Adaptyv Protein Design Competition! Humira, the best-selling drug ever, blocks TNF-α, an inflammation marker protein that’s overexpressed in rheumatoid arthritis and Crohn’s disease. In this challenge, the goal is to make a better binder for TNF-α that also releases selectively at pH 6.0 in the endosome of cells to improve drug half-life. The protein must also bind both human and mouse TNF-α, making it easier to test the same design in preclinical models.
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Submit now for Challenge 1: proteinbase.com/competitions…
Two days left for Challenge 1 of the Protein Design Competition! You have until Tuesday, October 6 to submit your designs. The goal of Challenge 1 is to design proteins that bind EGFR in the acidic environment of a tumour, but not at the neutral pH of healthy cells. Moreover, the proteins must bind to both the human and the mouse variant of EGFR to support easier preclinical testing. Submit your designs on @proteinbase now: proteinbase.com/competitions…
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The Protein Design Competition is back, bigger and better than ever thanks to our partnership with @AnthropicAI The competition will feature five challenges, each focused on a specific disease or biological mechanism. Compared to previous competitions, it will be a big step-up in complexity and scale to push the boundaries of AI-driven protein design. The competition is open to everyone and free to enter. It will feature 3 tracks: - Track 1 is aimed at expert protein designers, with up to 20 teams to be selected. - Track 2 is targeting life science academics and industry researchers. - Track 3 is open to everyone from tech enthusiasts to high-school students. A big thanks to @Modal for contributing compute for protein design and to @TwistBioscience for contributing the DNA for the experimental validation!
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Proteinbase retweeted
We raised a $40M Series A to build the automated lab for agentic biology. Last week, we shared the work we did with @Anthropic: Claude designed proteins, sent them to our automated wet lab, and got real experimental data back. We believe this is where biology is going: AI agents designing experiments, running them in automated wet labs, learning from the results and iterating. But AI can only move as fast as the experiments behind it. To use the potential of AI to cure all diseases, we need to build high-throughput wet lab infrastructure: a “biological gigafactory”. That’s exactly what we’re doing at Adaptyv. Over the past year we’ve grown our lab throughput by over 5x and onboarded more than 100 customers, ranging from bio AI labs like @chaidiscovery and @boltz_bio to pharmas like @Roche and @novonordisk to dozens and dozens of new startups that use AI to radically speed up drug discovery.
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Proteinbase retweeted
What happens when you let frontier LLMs design proteins, and then synthesize and test them in a wet lab? We ran a protein design competition with @muni_bio where AI agents competed against humans to design molecules that bind TREM2, a key receptor linked to Alzheimer’s. Results: GPT 5.2 and Grok 4.1 both placed in the top 5, with molecules showing strong binding to TREM2 when tested in our lab.
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Negative Results Bundle 😅 We just published 3 new collections on Proteinbase, and they're mostly negative results: · Boolean Biotech's (@btnaughton) VHH Competition (6 VHHs vs MBP) · @EvolvedTechInc Hackathon (80 designs vs CD16a/CD16-2) · PD-L1 FoldCraft by @KhRRustamov (35 de novo vs PD-L1) Clean non-binder data is still quite rare and useful, especially for training models. All open under ODC-ODbL.
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