Population genomics, RNA seq, RAD seq, Quantseq, genome assembly using TGS data, bioinformatics, bit of demographic analysis, iphone photographer
Tromsø, Norway
Joined September 2017
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- Following27
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Shripathi Bhat retweeted
Lastly, we provide a webtool as a practical approach for selecting cost-effective designs for maximizing eQTL power, found here: tomschwarz.shinyapps.io/RNAS… 5/
Shripathi Bhat retweeted
The official Twitter advert for our paper about Dsuite software for analysing gene flow. With @m_matschiner and @HannesSvardal
Do you want to assess evidence for gene flow across your genomic dataset? The Dsuite software is fast, easy to use with a VCF file, and implements a range of statistics based on allele sharing- ABBA-BABA, f4-ratio, f_d, d_f, F-branch, ...
Link to study → buff.ly/2GBzufx
Shripathi Bhat retweeted
I disagree with the Mojica issue. Kary Mullis took the Nobel for PCR, and nobody complained about Thomas Brock (discoverer of T. aquaticus) being left out.
Mojica named CRISPR seqs, but the prize is for the genome editing technique.
Shripathi Bhat retweeted
We have another four exciting seminars lined up for October! Every Wednesday.
Tell your friends, tell your colleagues.
Shripathi Bhat retweeted
updated book draft "computational #genomics with R"
compgenomr.github.io/book/.
Includes #Rstats ,#Chipseq, #MachineLearning, #Statistics, #multiomics, #BSseq and #rnaseq chapters.
Shripathi Bhat retweeted
.@jon_belyeu & Murad Chowdhury’s Samplot paper is out! Visually validate short or long read SVs with simple and intuitive images, peruse SVs in your VCF with a browser, and filter out 50% of your bad DELs with our ML model biorxiv.org/content/10.1101/… github.com/ryanlayer/samplot
Shripathi Bhat retweeted
The September cover image highlights the high amount of parallel adaptive evolution observed in Lake Baikal amphipods. Read the study here: buff.ly/30m2bUN
Shripathi Bhat retweeted
In our September issue, discover adiv: an #R package that provides methods for analysing #biodiversity, including approaches for quantifying species‐based, trait‐based and phylogenetic diversity within and between communities: bit.ly/2RXM6Qp
Shripathi Bhat retweeted
Here is where we sample #eDNA every month. Some sampling days are just amazing! @UiTGenetics
@owenwangensteen @KPraebel @RamaTeppo
Shripathi Bhat retweeted
Polygenic adaptation: a unifying framework to understand positive selection go.nature.com/2YJoVgV #Perspective by @NedaBarghi, Joachim Hermisson & Christian Schlötterer
Shripathi Bhat retweeted
Manuscript of @C_FraisseRios et al.
It describes DILS (cutt.ly/euckB0X), a user-friendly pipeline for inferring demographic history by taking into account selection effects. Now deployable everywhere, but hosted online soon
biorxiv.org/cgi/content/shor…
Shripathi Bhat retweeted
Congrats @NathanMertz5 for your work. Very nice presentation about how to use metabarcoding technologies to evaluate the incidence of amoebic gill disease (AGD). #MasterStudent #Salmonfarm @UiTGenetics
Shripathi Bhat retweeted
Yes, the same effect arises with recombination as well (see, e.g. journals.plos.org/plosgeneti…) but exactly how much is still an open question. We understand it pretty well when the mutations are all weakly selected, but strongly deleterious mutations are still a mystery.
Shripathi Bhat retweeted
Absolutely! CRISPR case system combined with simple detection strips will replace PCR for single species identification from tissue and dare I say #eDNA. Very exciting and so proud of my @GVLUCDavis colleagues. Major break through in transfering it to ecology and conservation!
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Shripathi Bhat retweeted
Bioinformatics is just writing the same script over and over again because you forgot where you put it last time you wrote it.
Shripathi Bhat retweeted
Our circumpolar assessment of the genetic population structure of #PolarCod - an #Arctic key-stone species - is out. Another brick in the puzzle for understanding the rapidly changing #Arctic #ecosystems
doi.org/10.1007/s00300-020-0…
Shripathi Bhat retweeted
So far we have had 7 recaptures from tagging of juvenile lumpfish plus a new distance record, one lumpfish tagged in Jully 2019 was recaptured in April 2020, 1230 km from the tagging location.
red = tagging, orange=recaptured
