@spikeinterface

SpikeInterface is an open-source Python framework for analysis of electrophysiology data and spike sorting. https://xitter.cf/t.co/FQKc5VIP3y

spikeinterface.readthedocs.io/en/latest/
Joined June 2022
  • Tweets57
  • Following23
  • Followers334
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Had a fantastic time at the @spikeinterface workshop hosted by @InfAtEd earlier this week! Tons of useful info about state-of-the-art methods in the arcane art of spike sorting ⚡️ Here's @buccino_alessio from @AllenInstitute hammering home the most sobering point of the week...
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Happening tomorrow - don't miss out... 🧠⬇️
Cambridge NeuroTech@CambNeuroTech1 Nov 2023
Join us and @buccino_alessio @spikeinterface @AllenInstitute on Nov 7th if you want learn about spike sorting from the experts with a follow-along tutorial covering best-practices for using the expansive SpikeInterface framework. Grab your spot here: eu1.hubs.ly/H0613yy0
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Join us and @buccino_alessio @spikeinterface @AllenInstitute on Nov 7th if you want learn about spike sorting from the experts with a follow-along tutorial covering best-practices for using the expansive SpikeInterface framework. Grab your spot here: eu1.hubs.ly/H0613yy0
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It's been a great pleasure to present @spikeinterface and recent updates in #ephys analysis at #ODIN23 at @mitbrainandcog! Lots of amazing neurotech and tools for data processing, modeling, and sharing to bring neuroscience to the next level! Thanks @neurovium for the invitation!
Nima Dehghani
@neurovium11 Oct 2023
Alessio Buccino (Allen Institute for Neural Dynamics) SpikeInterface & SpikeForest: Spike sorting in large-scale recordings @buccino_alessio #ODIN2023 @mcgovernmit @mitbrainandcog
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Now accepted in @IOPPublishing Journal of #Neural #Engineering ! Check out the accepted version here: iopscience.iop.org/article/1…

Compression strategies for large-scale electrophysiology data

Compression strategies for large-scale electrophysiology data, Buccino, Alessio P, Winter, Olivier, Bryant, David, Feng, David, Svoboda, Karel, Siegle, Joshua H

iopscience.iop.org
Alessio Buccino@buccino_alessio5 Jun 2023
Do you use #neuropixels or #highdensity probes? Are your recordings filling up your hard drives? We got you covered! In the first preprint from @AllenInstitute for Neural Dynamics, we looked at ways to reduce the footprint of #ephys data. biorxiv.org/content/10.1101/… (1/n)
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SpikeInterface retweeted
PythoNeuro@pythoneuro14 Aug 2023
Replying to @spikeinterface
@spikeinterface is a #Python module that enables you to preprocess extracellular recordings, run and compare *several* spike sorters, and visualize the results. Also have awesome documentation! #OpenScience #neuroscience @MatthiasHennig6 @buccino_alessio @cole_hurwitz
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Neuropixels 2.0 probes are now on sale! Multi-shank, miniaturized, higher density than 1.0. To order: neuropixels.org/post/neuropi… Our paper about the probes: science.org/doi/full/10.1126…
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With the use of #Neuropixels probes (or similar) for 𝑖𝑛 𝑣𝑖𝑣𝑜 recordings, it is very common to observe probe "drifts", which strongly degrade spike sorting accuracy. In our recent paper, we looked at several drift correction methods and evaluated their performance! (1/10)
bioRxiv Neuroscience@biorxiv_neursci30 Jun 2023
A modular approach to handle in-vivo drift correction for high-density extracellular recordings biorxiv.org/cgi/content/shor… #biorxiv_neursci
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Do you use #neuropixels or #highdensity probes? Are your recordings filling up your hard drives? We got you covered! In the first preprint from @AllenInstitute for Neural Dynamics, we looked at ways to reduce the footprint of #ephys data. biorxiv.org/content/10.1101/… (1/n)
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SpikeInterface retweeted
Ryan Ly@reallyryanly7 Mar 2023
Going to #cosyne2023? Come to my tutorial with @CatalystNeuro on Thu 8am to learn how to use @DANDIarchive & @NeurodataWB to find and reuse public neurophys. data, standardize and share your data, and use community tools to process and analyze your data! cosyne.org/tutorials
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Interested in building your own plugins for the Open Ephys GUI? Sign up for the Open Ephys Plugin Development Workshop, a half-day virtual event happening on January 13th: alleninstitute.org/what-we-d…
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Check our our #SfN2022 poster on converting data to NWB with NeuroConv and improving NWB data with NWB Inspector today 1-5pm at XX45!
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SpikeInterface retweeted
OpenBehavior@OpenBehavior13 Oct 2022
For the ephys crowd: @spikeinterface is an #opensource python module that evaluates and compares spike sorting algorithms. Users can preprocess neural data, run and benchmark spike sorters, and visualize sorted units. Read more at OpenBehavior.com! edspace.american.edu/openbeh…

About OpenBehavior

Open-Source Tools for Behavioral Neuroscience Research

edspace.american.edu
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