Infectious disease genomics. Staff Scientist at Los Alamos National Laboratory.
Joined March 2020
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🚨 Out now!🚨 Our #OneHealth study on multidrug-resistant #Shigella spread between humans & primates in Albuquerque is live @NatureComms 👉 nature.com/articles/s41467-0… Massive thanks to @NMDOH , @UNMHSC , @LosAlamosNatLab , @abqbiopark , @cabq & lead author @rovinsarahtonin ! 🔬🦠
Daryl Domman retweeted
It was an absolute delight to deliver a course on cholera genomics alongside the esteemed @nrt_thomson
Thank you @sangerinstitute for the opportunity to share knowledge and engage in such an important topic.
Daryl Domman retweeted
Preventing and Controlling Global Antimicrobial Resistance — Implementing a Whole-System Approach | New England Journal of Medicine nejm.org/doi/full/10.1056/NE…
Daryl Domman retweeted
Genomic insights into the 2022–2023 Vibrio cholerae outbreak in Malawi. nature.com/articles/s41467-0…
Daryl Domman retweeted
Really excited to share that our study is finally published in @Nature ! Longer post to follow but thanks so much to all of my co-authors, supervisors, the GPS consortium, and reviewers. @noemielefrancq @hsalje @StephenBentley5 @pneumowatch nature.com/articles/s41586-0…
Daryl Domman retweeted
Huge congrats to @torstenseemann (@TheDohertyInst) and @rpetit3 (@health_wyoming) for wining separate awards from @cziscience for Essential Open Source Software for Science! 🏆
These two are legends of open bioinformatics and are set to elevate their groundbreaking tools even further. 🚀🔬 This is a win for all of us working in pathogen genomics!
chanzuckerberg.com/eoss/prop…
#Bioinformatics #OpenSource #ScienceTitans
Daryl Domman retweeted
If you want to learn more about the history, epidemiology, population structure, virulence determinants, and AMR of Salmonella enterica serotype Paratyphi B phylogroup 1 (d-tar-), the etiological agent of paratyphoid B fever, please have a look at:
researchsquare.com/article/r…
Daryl Domman retweeted
Bactopia now supports AllTheBacteria assemblies! 🎉
If you are planning secondary analyses, this feature allows you to seamlessly use Bactopia.
To demonstrate this, here's a blog post using Bactopia to analyze 5400 L. pneumophila assemblies
bactopia.github.io/latest/bl…
First step in a community project to provide a uniformly assembled, annotated and searchable set of bacterial genomes, our preprint on our initial release of 1.9 million genome assemblies+taxonomic estimates. (figure compares with previous 661k dataset)
biorxiv.org/content/10.1101/…
Daryl Domman retweeted
Congruity of genomic and epidemiological data in modelling of local cholera outbreaks:
ow.ly/3nym50QXy4E #ProcB #Epidemiology
@DDomman @LokhovAndrey
Daryl Domman retweeted
Thrilled to announce the upcoming VIBRIO 2024 meeting in Lima Peru Oct 20-23,2024. Check out website for preliminary program. Registration will open soon. Please share!
Big thanks to the @BWFUND for the generous support. Also, thanks to @UCF and @UTSA!
event.fourwaves.com/vibrio20…
Daryl Domman retweeted
Bactopia is in pretty good company with @nf_core!
If Bactopia has been useful for you consider starring it, it's a metric I can use when applying for funding (haha unsuccessfully so far!), but mostly it's very motivating for continued development!
github.com/bactopia/bactopia
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Daryl Domman retweeted
Cholera requires an integrated approach using robust and early detection and effective case management of cases. Prevention is key - vaccines work in the immediate term and WSH is the long term solution. – at İstanbul, Türkiye
Daryl Domman retweeted
Congratulations to an awesome team on our new article in @PLOSNTDs
journals.plos.org/plosntds/a…
Daryl Domman retweeted
A #cholera outbreak with two strains: the power of #bacterialgenomics. A great collaboration between (in particular) @LebaneseUni, @AUB_Lebanon and @institutpasteur.
👉biorxiv.org/content/10.1101/…
Daryl Domman retweeted
Move over, Norse Gods – Marvel at new Asgard archaea named instead (@luisarchaeota) for the Puerto Rican goddess of the soil, Atabeya. Atabeyarchaeia is a new member of the lineage now widely believed to have given rise to eukaryotes – that is fungi, algae, trees and us.
Daryl Domman retweeted
🔥 Bactopia v3 is here! 🔥
The @nextflowio pipeline for bacterial genomes is now faster, packed with more tools, updated docs, and much much more!
Get started at: bactopia.github.io/v3.0.0/
#bioinformatics #genomics
Daryl Domman retweeted
.@WHO has published cholera statistics for 2022 and the reality is sobering - cases were reported in 44 countries, representing a doubling of the case count when compared to 2021.
Action and resources are needed to #EndCholera.
who.int/news/item/22-09-2023…
Daryl Domman retweeted
Microbiome studies are new? Nope. You have more microbe cells than human cells? Not true. Lederberg invented the term “microbiome”? Again….well, you get the gist of it.
Human microbiome myths and misconceptions | Nature Microbiology nature.com/articles/s41564-0…
Daryl Domman retweeted
Looking forward to using the updated Bactopia pipeline! Congrats to @rpetit3 for getting this done 🎉
🔥 Bactopia v3 is here! 🔥
The @nextflowio pipeline for bacterial genomes is now faster, packed with more tools, updated docs, and much much more!
Get started at: bactopia.github.io/v3.0.0/
#bioinformatics #genomics
Daryl Domman retweeted
🦠🌍microplanet.at Interested in working with us in Austria on how 'Microbiomes Drive Planetary Health'? >30 PostDoc & >16 PhD positions available in our Cluster of Excellence. Wide range of topics at the interface of environmental & medical microbiome sciences @FWF_at
