@gaojj
Joined October 2009
  • Tweets429
  • Following279
  • Followers308
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Thrilled to share AVM’s interactive #3DVisualization helped identify the A2ML1 biomarker in #cBioPortal #TCGA data, leading to a study in Pathology Research and Practice! Proud to drive #CancerResearch by accelerating discovery of patterns hidden in data! bit.ly/avpub
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Work with us on open source software for a summer! Feel free to reach out to me if you have any questions
cBioPortal@cbioportal28 Mar 2023
Work on Open Source Software for a summer and support Cancer Research! Read more: github.com/cbioportal/gsoc #gsoc #opensourcesoftware #cancerresearch
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My favorite moment of #ASCO22 - standing ovation and deafening applause! Congrats Dr. Modi and team! Proud for MSK!
Memorial Sloan Kettering Cancer Center
@MSKCancerCenter5 Jun 2022
HER2 targeted therapy has not been successful in treating cancer that is HER2-low, until now. MSK’s Dr. Modi shares the encouraging results from the DESTINY-Breast04, a randomized, phase 3 study at #ASCO22. bit.ly/3xl6PmT
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Come join the @cbioportal team! Work on open source software that is used by thousands of cancer researchers and clinicians daily to better understand and treat cancer - #cancer #hiring #opensourcesoftware #softwareengineer social.icims.com/viewjob/pt1…
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I 💓 our @OncoKB team
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Our cBioPortal poster is up right now at #AACR22, Poster Section 26 in the exhibitor hall, until 12 PM. Come by and meet part of the team.
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Replying to @OncoKB
@OncoKB is ready and in action! Visit us at booth #3134
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Work on Open Source Software for a summer and support Cancer Research! Paid internship - any age any background! Flexible schedule (175h or 350h projects) Read more: github.com/cbioportal/gsoc
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Our article describing genomenexus.org is now out in @JCOCCI_ASCO: ascopubs.org/doi/abs/10.1200… 🎉. Already heavily used for variant annotation by @cbioportal, @OncoKB and @AACR GENIE. Now available as a standalone tool for anyone. Try it out and let us know what you think!
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People!! @OncoKB has made it into the @NCCN Guidelines for #lungcancer !!! NCCN Guidelines = THE go-to reference for clinical oncologists & we've made it in!! Thanks to @OncoKB's intrepid Senior Scientist @SPSuehnholz for the find! (lots of exclamation marks in this tweet)
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Donations for the @sloan_kettering #CycleforSurvival are being matched. Please consider donating to our team to support cancer research. bit.ly/318WTQ2
Cycle for Survival@Cycle4Survival27 Dec 2021
We’re ending 2021 with a chance for you to earn a big fundraising boost. Starting tomorrow, donations to your #CycleforSurvival page will be doubled — up to a total of $1 million. Share the registration link and get ready to make twice the impact! cycleforsurvival.org/registe…

The Movement to Beat Rare Cancers | Cycle for Survival

Together, let's bring new and better treatment options to people with cancer. 100% of all money raised directly funds lifesaving rare cancer research at Memorial Sloan Kettering.

give.mskcc.org
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Came across this and felt it needs to be shared. Some wise guidance here. businessinsider.com/virologi…

Read the letter a virologist sent his family on how to best protect themselves from the Omicron...

"This pandemic will pass, just like the Spanish Flu a hundred years ago, but no one can predict when," wrote Guido Vanham in a letter to his kids.

businessinsider.com
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Another fantastic article. @KatherineJWu should be required reading for undergraduate biology students! We'd have a lot more immunologists in the world and that would be a great thing. theatlantic.com/science/arch…

T Cells Might Be Our Bodies’ Best Shot Against Omicron

The new variant may undermine some vaccine-derived defenses. But the immune system’s best assassins are likely to hold the line.

theatlantic.com
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Our faculty search @CompOncMSK @sloan_kettering is closing soon. Late stage postdocs and ECIs please get your materials in by Jan 08 2022. Link to the ad is here: tinyurl.com/5aku92jr . Interviews will begin early 2022. Come and join us!
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Hey, New York City! We're coming for you in May 2022. Learn more and register here: cycleforsurvival.org/registe…
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MASSIVE @OncoKB release people! 4 new levels of evidence assignmts: Incl L3A for KRAS G12C in colorectal cancer (adagrasib +/- cetux) & IDH1 R132 in glioma (ivosidenib) & 3 new genes & Release of OncoKB SOP v2.2 & L1/2⏬ L3A for BRCA mut in breast ca & MET Y1003 in lung ca Whew!
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Our next How-To video is now posted, explaining how to add clinical data and filter on specific columns in the mutations tab. youtube.com/watch?v=q9No2073…

cBioPortal: Filtering and adding clinical data to Mutations tab

This video highlights two new features to use on the Mutations tab:...

youtube.com
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Large new cBioPortal data release: 3,680 samples from 6 published studies: pan-cancer data from #PCAWG (@Nature 2020), gliomas from the #GLASS Consortium (@Nature 2019), as well as several @sloan_kettering MSK-IMPACT studies. cbioportal.org/news
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Introducing our new How-To Videos, a short and sweet way to highlight cBioPortal features: #1 explains how to compare tumor samples based on the expression level of an individual gene (using EGFR in glioma as an example). youtube.com/watch?v=HTiKUXk0…

cBioPortal: Comparing samples based on expression level of a gene

This video shows how to define groups of samples based on the expre...

youtube.com
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And check out the new portal that goes with this paper: signaldb.org! Think of it like @gnomad_project but for germline variation in cancer. It was a pleasure building this with @chaiband @srinipr4 @MFBerger1 @BarryTaylorLab and our usual posse @gaojj, Onur and Xiang
Chai Bandlamudi@chaiband5 Nov 2021
Replying to @chaiband
We are excited to share a new portal for integrated somatic and germline interpretation. signaldb.org. Thanks to the phenomenal scientific engineering team led by @gaojj with @inodb, Onur Sümer, Xiang Li. 15/n
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