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higlass.io

@higlass_io

Big data viewer extraordinaire!

 Boston, MA
higlass.io
Joined January 2019
  • Tweets111
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  • Followers326
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Photo by higlass.io (@higlass_io)Photo by higlass.io (@higlass_io)Photo by higlass.io (@higlass_io)Photo by higlass.io (@higlass_io)Photo by higlass.io (@higlass_io)Photo by higlass.io (@higlass_io)Photo by higlass.io (@higlass_io)Photo by higlass.io (@higlass_io)Photo by higlass.io (@higlass_io)Photo by higlass.io (@higlass_io)
200 stars on Github ⭐️ Cool! 🤓 github.com/higlass/higlass
GitHub - higlass/higlass: Fast, flexible and extensible genome browser.

GitHub - higlass/higlass: Fast, flexible and extensible genome browser.

Fast, flexible and extensible genome browser. Contribute to higlass/higlass development by creating an account on GitHub.

github.com
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Happy to collaborated with @suragnair from @anshulkundaje lab! The dynseq browser track paper is online at @NatureGenet today! dynseq track is also integrated to @higlass_io and @GenomeBrowser. @twang5 nature.com/articles/s41588-0…
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higlass.io retweeted
trevor manz (@trevmanz) profile picture
trevor manz@trevmanz17 Aug 2022
An overview of #goslinglang and our current integrations in Python and R. Thanks for the highlight, @j_perkel!
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We created somatic mutation rate maps for 37 different types of cancer. These maps can be interactively browsed thanks @pkerpedjiev and the power of @higlass_io. Take a look! resgen.io/maxsh/Cancer_Mutat…
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higlass.io retweeted
4DN DCIC (@4dn_dcic) profile picture
4DN DCIC@4dn_dcic12 Jan 2022
Check out our new video on how to use the 4DN Visualization Workspace, powered by @higlass_io youtube.com/watch?v=LEDaOa3N… Then try it yourself at data.4dnucleome.org/tools/vi… @4DNucleome
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higlass.io retweeted
Sarah Reiff (@sbreiff) profile picture
Sarah Reiff@sbreiff8 Jan 2022
I have a video up! Watch for an introduction to using the @higlass_io viewer integrated into the 4DN data portal! youtu.be/LEDaOa3NZtM @4dn_dcic #4dnucleome
HiGlass Visualization in the 4DN Data Portal

HiGlass Visualization in the 4DN Data Portal

Intro to HiGlass Visualization in the 4DN Data PortalIn this tuto...

youtube.com
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The number of higlass plugin tracks is growing! To make it easier to use them all, we created higlass-plugins which aggregates some of the more commonly used plugins into one convenient package. Take a look at github.com/higlass/higlass-p… for more information.
Image from higlass.io (@higlass_io)
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Sehi L'Yi (@sehi_lyi) profile picture
Sehi L'Yi@sehi_lyi28 Jul 2021
🎉 Happy to hear that our #gosling project on grammar-based interactive genomics visualization won Best Abstract Award w/ @WangQianwenToo @flekschas and @ngehlenborg from #biovis #ismbeccb2021. Find out more on gosling.js.org (demo) and gosling-lang.org (docs)
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Some sweet new updates to the higlass-pileup track by Alexander Veit of the @4dn_dcic! Most notably there’s now an option to display a coverage plot and you can use custom color schemes. See live demo with @GenomeInABottle HG002 data here: higlass.io/l/?d=YMWfYEUYRial…
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resgen_io (@resgen_io) profile picture
resgen_io@resgen_io6 Jan 2021
Just for fun, here's some stats for resgen.io from the bygone 2020: * Total hosted datasets: 2443 * Total size of all hosted datasets: 2.7Tb * Total visitors: 925 * Total visits: 2.77K * Total saved viewconfs: 1092 Thanks to everybody that contributed! 🤗
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Woo hoo! We made the list.
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📣 Small but super important release (v1.11) out last weekend! Thanks to @keller__mark, you can now create custom data fetchers. This serverless example uses #zarr to fetch data for multivec and bar tracks. Pretty amazing! cc @nvictus @trevmanz @alimanfoo higlass.github.io/higlass-za…
Image from higlass.io (@higlass_io)
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Along with the paper, data and software, we provide a newly developed browser, built upon @higlass_io: index.altius.org/ Browse data across 733 biosamples, download annotated DHSs for your region of interest, and export publication-quality genome browser views.
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📣 HiGlass v1.10.0 is out! No more horizontal-* and vertical-* tracks, new colored rules, error logging in the viewconf editor and more. Check out the CHANGELOG here: github.com/higlass/higlass/b…
Image from higlass.io (@higlass_io)
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To clarify, there's still horizontal and vertical tracks, they're just not named differently. Instead of having `horizontal-bar-track` and `vertical-bar-track`, we just have a `bar-track` that can be placed in a horizontal or vertical position. Much easier to use and maintain!
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