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PATHDET

@pathdet

PATHDET is a web application for “PATHogen DETection” from extracellular DNA/RNA via high-throughput sequencing data for infectious diseases. Dev by @cikazda.

 RIEM, Nagoya Univ., Japan
github.com/khoriba/PATHDET_short-read
Joined January 2020
  • Tweets49
  • Following169
  • Followers43
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Photo by PATHDET (@pathdet)
Our study analyzing both pathogen detection and host gene expression in HLH patients has been published. Cell-free RNA profiling suggested mitochondrial RNAs as potential biomarkers of virus-associated HLH. #mNGS #cfRNA #PATHDET doi.org/10.1002/jmv.71122
Comprehensive Viral Detection and Profiling of Plasma Cell‐Free RNA in Patients With Suspected...

Comprehensive Viral Detection and Profiling of Plasma Cell‐Free RNA in Patients With Suspected...

Hemophagocytic lymphohistiocytosis (HLH) is a severe, rapidly progressive disease. While viral infection is considered a common etiology of pediatric HLH, specific causative viruses other than the...

onlinelibrary.wiley.com
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国立感染症研究所の病原体ゲノム解析研究センターでは、感染症を引き起こす細菌・真菌・ウイルス等のゲノム配列解析と情報提供を通じて、我が国の感染症対策の基盤となるゲノム研究を推進しています。#国立健康危機管理研究機構  #JIHS #国立感染症研究所 #NIID
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mNGS found Prevotella spp. in culture-negative pus samples in muscle abscesses.#metagenome #NGS #pathdet sciencedirect.com/science/ar…
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mNGS, using PATHDET pipeline, revealed Fusobacterium arthritis. #ngs #metagenome @pathdet The contribution of metagenomic next-generation sequencing to a diagnosis of gas-producing Fusobacterium-induced septic hip arthritis: A case report sciencedirect.com/science/ar…
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PATHDET detected GAS in a pleural fluid using metagenomic NGS. Severe Parapneumonic Effusion in a Child With Respiratory Syncytial Virus and Streptococcus pyogenes Coinfection cureus.com/articles/327252-s…
Severe Parapneumonic Effusion in a Child With Respiratory Syncytial Virus and Streptococcus...

Severe Parapneumonic Effusion in a Child With Respiratory Syncytial Virus and Streptococcus...

A four-year-old boy with respiratory syncytial virus (RSV) infection and suspected bacterial coinfection deteriorated despite antibiotic treatment. Intensive care and thoracoscopic debridement w...

cureus.com
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Is that just me, or Today's poster session @MicroTas2022 was quiet? Anyway, if you want yo chat about any of our posters, please DM! 🙏 Also please admire our colour matching poster selection 🤩 #microtas2022 #microfluidics #LabOnAChip
Image from Maïwenn Kersaudy-Kerhoas (@ClinicalMkk)
Image from Maïwenn Kersaudy-Kerhoas (@ClinicalMkk)
Image from Maïwenn Kersaudy-Kerhoas (@ClinicalMkk)
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Performance of Nanopore and Illumina metagenomic sequencing for pathogen detection and transcriptome analysis in infantile central nervous system infections ✅ Just Accepted 🔓 Open Access 🔗 bit.ly/3roQ6v9
Image from Open Forum Infectious Diseases (@OFIDJournal)
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I'm excited to speak at the free #WSCSpotlight on April 27! I will discuss our @iSEP_SEQ 'microfluidics + sequencing' approach to diagnose sepsis. Join me and 35+ speakers discussing diagnostic approaches for #sepsis. For more info and free registration wscspotlight.org
WSC Spotlight 2022 - Register Now

WSC Spotlight 2022 - Register Now

Free of charge and entirely virtual on April 27, 2022.

wscspotlight.org
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Delighted to learn that the @nanopore MK1C has reached @nimrnigeria for our work in @iSEP_SEQ project with @OAUniversity @pathdet sequencing Circulating microbial cfDNA 💜
Image from Maïwenn Kersaudy-Kerhoas (@ClinicalMkk)
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The project is in collaboration with Obafemi Awolowo University and @nimrnigeria in Nigeria and @pathdet project (Prof Ito) from Nagoya University
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