Wayne ~~ ~Jupyter Distinguished Contributor~ ~ ~ https://xitter.cf/t.co/LePW5cCMOK ~ ~ ~ ~ ~ ~ I run Proteopedia's social media too ~~ ~He/His
Syracuse, NY
Joined September 2012
- Tweets1.8K
- Following665
- Followers247
- Likes11.6K
Wayne retweeted
I'm excited to get Binder / JupyterHub launch button functionality back into Jupyter Book 2!
Gets a little better every day!
github.com/jupyter-book/myst…
Wayne retweeted
Project Jupyter is thrilled to share the news about the Jupyter Foundation! #jupyter #jupyterfoundation #opensource
Millions of researchers, scientists, and engineers rely on @ProjectJupyter 📓 Today, the LF is proud to announce the launch of the Jupyter Foundation to support Project Jupyter’s software, standards and services for interactive computing.
🔗hubs.la/Q02YCFV00
#OpenSource
Wayne retweeted
This is super cool: a full Python app and LLM running in the browser at @py_cafe
Now that LLMs are able to run entirely on client side, I ported over my matplotlib tweaker app and made a few upgrades! Try it over at PyCafe; no API key needed! py.cafe/ahuang11/chat-with-p…
Wayne retweeted
How does the human #ribosome machinery select an open reading frame on mRNA for translation? Check out our #cryoEM work @NatureSMB: rdcu.be/dUbMg
Thanks to all involved - most of all first author @V_Petrychenko and our collaborators from the Rodnina lab @mpi_nat. 1/5
Wayne retweeted
First structure of a H/ACA snoRNP acting in ribosome synthesis. In a great collaboration with the Hurt lab, we provide a detailed structural and biochemical view of the snR30 snoRNP guiding local 18S rRNA subdomain folding. 👇👇👇
Wayne retweeted
We're thrilled to share an update about our continued collaboration with @developmentseed on the @NASA Visualization, Exploration and Data Analysis (VEDA) platform! See how we've made it easier for researchers to explore large geospatial datasets 🌍 2i2c.org/blog/2024/veda-devs…
Wayne retweeted
🥳 Exciting news! You can now experiment with free-threaded Python! 🐍 This major change to CPython allows running multiple threads in parallel for better performance on modern CPUs. Check out Quansight Labs' blog to learn more and get started! 👀 buff.ly/3LIRwdV #python
Wayne retweeted
The Animation Lab is hiring! We're looking for a software developer for an exciting new project creating intuitive tools for molecular animation. Experience with Python req'd and Blender preferred. Please forward to any interested folks! employment.utah.edu/salt-lak…
Wayne retweeted
I am excited to share this story led by Yujing Cheng and Siwen Wang (not on X) in @CellCellPress which describes a new function for a small nucleolar RNA (snoRNA) in senescence and ribosome biogenesis. Read on for a brief 🧵1/
cell.com/cell/fulltext/S0092…
Wayne retweeted
YeastMine is closing July 15 due to ongoing funding cuts. For more info: community.alliancegenome.org… #yeast
Wayne retweeted
Did you see the bridge RNA papers yesterday? Bacterial transposons promote programmable, RNA-guided DNA recombination.
Remarkably, we found that the recombinase was co-opted in archaea and eukaryotes for widspread RNA-guided RNA modification, an essential function in humans!
New preprint: In a fun collaboration with the @SternbergLab, we reveal the evolutionary origin of eukaryotic RNA-guided RNA modification (Nop5 and Prp31) in recently characterized bacterial IS110-family transposons.
biorxiv.org/content/10.1101/…
"In this first map of pseudouridine modifications for C. elegans, we find that they largely reside in coding sequences and that the number of genes with this modification increases with age."
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Wayne retweeted
It was a pleasure presenting at my first @Sca_DS.AI #SummerSchool! I spoke about #LLMs for #BioImageAnalysis, including best-practices for prompt-engineering, LLM fine-tuning, RAGs and benchmarking. 🔬💻🚀🔓
Slides #openaccess: zenodo.org/records/12518075
After a quick lunch, @haesleinhuepf shared insights on using large language models for quantitative bio-image analysis. His talk highlighted the role of prompt engineering in solving common bio-image tasks. #ScaDSAISummerSchool24 #AppliedAI
Wayne retweeted
🎉 Great news for the #GIS and #Jupyter communities! The @ESA is funding a project by @QuantStack and @simula_research to bring collaborative editing to GIS workflows in JupyterLab. Let's explore new ways of working with geospatial data! 🚀 blog.jupyter.org/jupytergis-…
Wayne retweeted
Here is another fun one over on @py_cafe ☕️
Protein residue coloring in ipymolstar is now super fast with the latest PDBeMolstar version.
Makes for very responsive protein viewer apps!
And supports dark mode 😎
Wayne retweeted
That's two RNA 3D structure modules: one is a four-way junction loop and another is a long-range helix-helix interface, but can you spot the difference?🧐
Find out which is which in our recent preprint on RNA tertiary motif search and their isostericity:
doi.org/10.1101/2024.05.31.5…
Wayne retweeted
Figeno, my visualization tool for genomics🎨🧬, is now published in Bioinformatics! doi.org/10.1093/bioinformati…
It can generate publication-quality figures for sequencing data along genomic coordinates: bigwig, HiC, @nanopore data with base modifications, and WGS with CNAs and SVs.
Wayne retweeted
I just recorded a two-minutes tutorial on how to get started with anywidget in @ProjectJupyter 🪐
youtube.com/watch?v=eHUg2Yk-…
