Professor @ NTNU | Follow me on Blueskye instead: https://teapaw.org/t.co/3Zy7NZTZoq
Joined January 2021
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Eivind Almaas 🦋@a1maas.bsky.social retweeted
>95% have forever chemicals #PFAS in blood. PFAS are linked to cancer, infertility, dev & immune issues. We now have a tool to sharpen to get rid of this poison of the century from body! Our preprint on PFAS bioaccumulation by human gut bacteria! 🧵(1/8)
biorxiv.org/content/10.1101/…
Eivind Almaas 🦋@a1maas.bsky.social retweeted
BREAKING: Donald Trump just announced if he wins, he will lift sanctions on Russia and Iran. This is why Putin was paying millions to Republican influencers. He’s bought control of Trump’s party. Retweet so all Americans see this alarming announcement.
Eivind Almaas 🦋@a1maas.bsky.social retweeted
"Vitamin D regulates microbiome-dependent cancer immunity". An insightful example of the importance of small molecule-microbiome interactions. Glad to have had the opportunity to contribute to this landmark study by @giampazolias @ReiseSousaLab
science.org/doi/full/10.1126…
Eivind Almaas 🦋@a1maas.bsky.social retweeted
I just updated our Python toolbox for enumerating and sampling minimal pathways in metabolic (sub)networks. It is now faster and more reliable than ever.
Check out mptool on GitLab (gitlab.com/csb.ethz/mptool) or run "pip install mptool" to install the latest version.
@CSB_ETHZ
Eivind Almaas 🦋@a1maas.bsky.social retweeted
If you are interested in genome-scale metabolic modeling and how to choose an optimization solver, I ran some benchmarks that might help... :)
Just published in mSystems: journals.asm.org/doi/10.1128…
Eivind Almaas 🦋@a1maas.bsky.social retweeted
I wrote a blog post about scientific racism and the @AllofUsResearch figure illustrating their ancestry analysis. The post was inspired by a presentation of @DelaneyKSull at our lab DEI meeting organized by @NikhilaSwarna last week.
liorpachter.wordpress.com/20…
cc @AllofUsCEO
Eivind Almaas 🦋@a1maas.bsky.social retweeted
Out now! @suneman, @germansave, and colleagues introduce an approach that creates embeddings of life-events in a single vector space, allowing them to predict different life-event outcomes. nature.com/articles/s43588-0…
👉rdcu.be/dtVdd
Eivind Almaas 🦋@a1maas.bsky.social retweeted
How to measure the true impact of interdisciplinary science?
Our paper featured on the cover of PNAS (@PNASNews) introduces a network-based approach.
PDF: barabasilab.com/science/publ…
Let's dive into the highlights! #ScienceOfScience
1/n
Eivind Almaas 🦋@a1maas.bsky.social retweeted
Magdi jobber ikke for Schibsted, så her er kan du lese uten betalingsmur.
Eivind Almaas 🦋@a1maas.bsky.social retweeted
Excited to share our new paper, ‘Accelerating network layouts using graph neural networks’ just out in @NatureComms with @csabath95, @nimatabari, and @yuqirose: rdcu.be/c77wd
NeuLay is a machine-learning framework to speed up network visualization.
See thread:
Eivind Almaas 🦋@a1maas.bsky.social retweeted
Congratulations for Natalia Kakko and @arantas_ for great work, thanks to all co-authors including @merjaelisa ! Our work on synthetic growth regulation in Saccharomyces cerevisiae for enhancing production is out: pubs.acs.org/doi/10.1021/acs…
Eivind Almaas 🦋@a1maas.bsky.social retweeted
Individualized (personalized) medicine has traditionally included gene-drug interactions (pharmacogenomics). Now add gut microbiome-drug interactions
nature.com/articles/s41587-0… @NatureBiotech by @heinken_almut @ines_thiele and colleagues
Eivind Almaas 🦋@a1maas.bsky.social retweeted
The cool yeasts are tacking to progress against wind or analogously natural selection
10/2022 Issue ➡️ bit.ly/3znKHIO
Cover (@TeamSciStories): @kiran_r_patil &colleagues @MRC_TU evolve a wine yeast strain for increased aroma secretion using a new algorithm for designing chemical environments for adaptive #evolution
Eivind Almaas 🦋@a1maas.bsky.social retweeted
New preprint out: Using six different methods, we integrated SALARECON with transcriptomics data to model Atlantic salmon liver metabolism under specific conditions differing in water salinity and dietary lipids. 🐟🧂🧈 @UniNMBU @DigitaltLiv
Transcriptomics data integration for context-specific modeling of Atlantic salmon metabolism: functional evaluation of methods based ... biorxiv.org/cgi/content/shor… #biorxiv_sysbio
Eivind Almaas 🦋@a1maas.bsky.social retweeted
Our Biofuel SFA's latest article detailing our examination of role of exometabolites in improving algal biomass production
academic.oup.com/femsec/arti…
Eivind Almaas 🦋@a1maas.bsky.social retweeted
Set of practical and methodological recommendations to address socioeconomic vulnerabilities in epidemic models.
nature.com/articles/s41467-0…
by @mtizzoni @laetitiagvn @ensoesie @net_science @bansallab @MartonKarsai @NatureComms
Eivind Almaas 🦋@a1maas.bsky.social retweeted
How much nutrient is in your food?
The answer is provided in a paper published with @menicgiulia, featured on the cover of @NatureFoodJnl #Foodome
PDF here: barabasilab.com/media/2022-N…
Eivind Almaas 🦋@a1maas.bsky.social retweeted
The EpiPop platform epi-pop.org/ simulates the spreading of an infectious disease on a metapopulation network, allowing to explore the time evolution of the disease. 1/4
Eivind Almaas 🦋@a1maas.bsky.social retweeted
Drugs, natural compounds & pollutants extensively impact our microbiome, and vice versa. Thanks @AnnaELindell and Maria Zimmermann-Kogadeeva for this fantastic review highlighting interaction mechanisms! @embl @MRC_TU @Cambridge_SBS @Cambridge_Uni
Multimodal interactions of drugs, natural compounds and pollutants with the gut microbiota
Xenobiotics affect the composition and function of the gut microbiota. Lindell, Zimmermann-Kogadeeva & Patil discuss reciprocal interactions and their mechanisms
rdcu.be/cF5cd
Eivind Almaas 🦋@a1maas.bsky.social retweeted
Position as Professor/Associate Professor of Microbial Ecology in our department at NTNU (deadline Feb 9th).
jobbnorge.no/en/available-jo…